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- Genomics
- , Transcriptomics
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- Systems Biology
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- Software tool
ISMARA
Webservice for gene expression and epigenetic data analysis
CREMA
- Genes & Genomes
- Systems Biology
- Software tool
CREMA is an online tool which automatically infers regulatory networks from chromatin accessibility (ATAC/DNase-seq) or enhancer mark (ChIP-seq) data. CREMA directly processes raw data of a set of samples (FASTQ files), identifies cis-regulatory elements (CREs) , infers key transcription factors driving the observed chromatin state changes across the experimental conditions, and makes detailed predictions regarding their regulatory roles.
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ChIP-Seq
ChIP-Seq data analysis tools-
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SwissRegulon Portal
Tools and data for regulatory genomics-
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Phylogibbs
Regulatory sites in a collection of DNA sequences-
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SwissRegulon
Database of genome-wide annotations of regulatory sites-
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Eukaryotic Promoter Database-
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QuasR
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