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UniProtKB/Swiss-Prot entry Q9SKK0


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name EBF1_ARATH
Primary accession number Q9SKK0
Secondary accession number Q0WM37
Integrated into Swiss-Prot on January 23, 2007
Sequence was last modified on May 1, 2000 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 57)
Name and origin of the protein
Protein name EIN3-binding F-box protein 1
Synonym F-box/LRR-repeat protein 6
Gene name
Name: EBF1
Synonyms: FBL6
OrderedLocusNames: At2g25490
ORFNames: F13B15.15
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, TISSUE SPECIFICITY, SUBCELLULAR LOCATION, INDUCTION, AND INTERACTION WITH CUL1; SKP1A/ASK1; SKP1B/ASK2; EIN3 AND EIL1.
DOI=10.1016/S0092-8674(03)00968-1; PubMed=14675533 [NCBI, ExPASy, EBI, Israel, Japan]
Potuschak T., Lechner E., Parmentier Y., Yanagisawa S., Grava S., Koncz C., Genschik P.;
"EIN3-dependent regulation of plant ethylene hormone signaling by two Arabidopsis F box proteins: EBF1 and EBF2.";
Cell 115:679-689(2003).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/45471; PubMed=10617197 [NCBI, ExPASy, EBI, Israel, Japan]
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
Nature 402:761-768(1999).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 245-384.
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[5]
GENE FAMILY, AND NOMENCLATURE.
DOI=10.1016/S1360-1385(00)01769-6; PubMed=11077244 [NCBI, ExPASy, EBI, Israel, Japan]
Xiao W., Jang J.-C.;
"F-box proteins in Arabidopsis.";
Trends Plant Sci. 5:454-457(2000).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AJ609238; CAE75864.1; -; Genomic_RNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC006300; AAD20708.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY072205; AAL60026.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY091333; AAM14272.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK229995; BAF01819.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A84649; A84649.
RefSeq NP_565597.1; -.
UniGene At.24288
3D structure databases
ModBase Q9SKK0.
Protein-protein interaction databases
IntAct Q9SKK0; -.
Organism-specific databases
TAIR At2g25490; -.
Gene expression databases
ArrayExpress Q9SKK0; -.
Ontologies
GO
GO:0005634; Cellular component: nucleus (traceable author statement from TAIR).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
GO:0010105; Biological process: negative regulation of ethylene mediated signaling pathway (traceable author statement from TAIR).
QuickGo view.
Family and domain databases
InterPro IPR001810; F-box.
IPR001611; LRR.
IPR006553; LRR_cys_sub-typ.
Graphical view of domain structure.
Pfam PF00646; F-box; 1.
PF00560; LRR_1; 3.
Pfam graphical view of domain structure.
SMART SM00256; FBOX; 1.
SM00367; LRR_CC; 1.
SMART graphical view of domain structure.
PROSITE PS50181; FBOX; FALSE_NEG.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q9SKK0.
Genome annotation databases
GeneID 817087; -.
GenomeReviews CT485783_GR; AT2G25490.
KEGG ath:AT2G25490; -.
NMPDR fig|3702.1.peg.9563; -.
Other
ProtoNet Q9SKK0.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Ethylene signaling pathway; Leucine-rich repeat; Nucleus; Repeat; Ubl conjugation pathway.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   628  628     EIN3-binding F-box protein 1. PRO_0000272245
DOMAIN   61   109  49     F-box. 
REPEAT   78    95  18     LRR 1. 
REPEAT   96   149  54     LRR 2. 
REPEAT   150   176  27     LRR 3. 
REPEAT   177   203  27     LRR 4. 
REPEAT   204   246  43     LRR 5. 
REPEAT   247   273  27     LRR 6. 
REPEAT   274   297  24     LRR 7. 
REPEAT   298   322  25     LRR 8. 
REPEAT   323   351  29     LRR 9. 
REPEAT   352   377  26     LRR 10. 
REPEAT   378   402  25     LRR 11. 
REPEAT   403   457  55     LRR 12. 
REPEAT   458   484  27     LRR 13. 
REPEAT   485   509  25     LRR 14. 
REPEAT   510   531  22     LRR 15. 
REPEAT   532   555  24     LRR 16. 
Sequence information
Length: 628 AA [This is the length of the unprocessed precursor] Molecular weight: 66589 Da [This is the MW of the unprocessed precursor] CRC64: 805CD1A3D441F392 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK 

        70         80         90        100        110        120 
PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS SIRQKEIDVP SKITEDGDDC 

       130        140        150        160        170        180 
EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG 

       190        200        210        220        230        240 
SLSLWNVSTI TDNGLLEIAE GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS 

       250        260        270        280        290        300 
RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA 

       310        320        330        340        350        360 
VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC 

       370        380        390        400        410        420 
PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV TQFGFFGSLL NCGEKLKAFS 

       430        440        450        460        470        480 
LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI 

       490        500        510        520        530        540 
TESGFLHLIQ SSLVKINFSG CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA 

       550        560        570        580        590        600 
ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG 

       610        620 
LNLQQCRSIS NSTVDFLVER LYKCDILS 

Q9SKK0 in FASTA format

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