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UniProtKB/Swiss-Prot entry Q9LTV6


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DECR2_ARATH
Primary accession number Q9LTV6
Secondary accession numbers Q67Y37 Q680G7
Integrated into Swiss-Prot on May 24, 2005
Sequence was last modified on October 1, 2000 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 48)
Name and origin of the protein
Protein name Peroxisomal 2,4-dienoyl-CoA reductase
Synonym EC 1.3.1.34
Gene name
OrderedLocusNames: At3g12800
ORFNames: MBK21.23
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1093/dnares/7.2.131; PubMed=10819329 [NCBI, ExPASy, EBI, Israel, Japan]
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones.";
DNA Res. 7:131-135(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AB024033; BAB02424.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY072396; AAL62388.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY114700; AAM48019.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK175259; BAD43022.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK175900; BAD43663.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK176181; BAD43944.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK176305; BAD44068.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK176508; BAD44271.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK176631; BAD44394.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK176892; BAD44655.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK176909; BAD44672.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK176776; BAD44539.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK221326; BAD94126.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_187886.2; -.
UniGene At.47252
3D structure databases
HSSP P19992; 2HSD. [HSSP ENTRY / PDB]
ModBase Q9LTV6.
Organism-specific databases
TAIR At3g12800; -.
Gene expression databases
GermOnline AT3G12800; Arabidopsis thaliana.
Ontologies
GO
GO:0005777; Cellular component: peroxisome (inferred from electronic annotation from UniProtKB-KW).
GO:0005886; Cellular component: plasma membrane (inferred from direct assay from TAIR).
GO:0008670; Molecular function: 2,4-dienoyl-CoA reductase (NADPH) activity (inferred from electronic annotation from EC).
GO:0005488; Molecular function: binding (inferred from electronic annotation from InterPro).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR002198; DHase_sc/Rdtase_SDR.
IPR002347; Glc/ribitol_DHase.
IPR016040; NAD(P)-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.720; NAD(P)-bd; 1.
PANTHER PTHR19410; ADH_short_C2; 1.
Pfam PF00106; adh_short; 1.
Pfam graphical view of domain structure.
PRINTS PR00081; GDHRDH.
PR00080; SDRFAMILY.
PROSITE PS00061; ADH_SHORT; FALSE_NEG.
ProtoNet Q9LTV6.
Genome annotation databases
GeneID 820462; -.
GenomeReviews BA000014_GR; AT3G12800.
KEGG ath:AT3G12800; -.
NMPDR fig|3702.1.peg.13360; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; NADP; Oxidoreductase; Peroxisome.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   298  298     Peroxisomal 2,4-dienoyl-CoA reductase. PRO_0000054564
NP_BIND   17    41  25     NADP (By similarity). 
MOTIF   296   298  3     Microbody targeting signal (Potential). 
CONFLICT   127   127        M -> L (in Ref. 3; BAD44394). 
CONFLICT   238   239        MA -> IT (in Ref. 3; BAD43663). 
Sequence information
Length: 298 AA [This is the length of the unprocessed precursor] Molecular weight: 31796 Da [This is the MW of the unprocessed precursor] CRC64: 5606E22FC53D4F0A [This is a checksum on the sequence]
        10         20         30         40         50         60 
MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG 

        70         80         90        100        110        120 
IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN FLAAAEDLSP NGFRTVLDID 

       130        140        150        160        170        180 
AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT 

       190        200        210        220        230        240 
RNLALEWGTD YDIRVNGIAP GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA 

       250        260        270        280        290 
LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL 

Q9LTV6 in FASTA format

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View entry in raw text format (no links)
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BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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NPSA logo NPSA Sequence analysis tools

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