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UniProtKB/Swiss-Prot entry Q9FDX1


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name SKIP1_ARATH
Primary accession number Q9FDX1
Secondary accession numbers None
Integrated into Swiss-Prot on January 23, 2007
Sequence was last modified on March 1, 2001 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 46)
Name and origin of the protein
Protein name Protein SKIP1
Synonym SKP1-interacting partner 1
Gene name
Name: SKIP1
OrderedLocusNames: At5g57900
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND INTERACTION WITH SKP1A/ASK1.
DOI=10.1093/emboj/20.11.2742; PubMed=11387208 [NCBI, ExPASy, EBI, Israel, Japan]
Farras R., Ferrando A., Jasik J., Kleinow T., Oekresz L., Tiburcio A., Salchert K., del Pozo C., Schell J., Koncz C.;
"SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase.";
EMBO J. 20:2742-2756(2001).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1093/dnares/5.3.203; PubMed=9734815 [NCBI, ExPASy, EBI, Israel, Japan]
Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence features of the regions of 1,367,185 bp covered by 19 physically assigned P1 and TAC clones.";
DNA Res. 5:203-216(1998).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Quinitio C., Chen H., Kim C.J., Shinn P., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF263377; AAG21976.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB013396; BAB08860.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK229464; BAF01322.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT026067; ABG48423.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_568870.1; -.
UniGene At.7657
3D structure databases
ModBase Q9FDX1.
Protein-protein interaction databases
IntAct Q9FDX1; -.
Organism-specific databases
TAIR At5g57900; -.
Ontologies
GO
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
QuickGo view.
Family and domain databases
InterPro IPR001611; LRR.
Graphical view of domain structure.
Pfam PF00560; LRR_1; 2.
Pfam graphical view of domain structure.
BLOCKS Q9FDX1.
Genome annotation databases
GeneID 835901; -.
GenomeReviews BA000015_GR; AT5G57900.
KEGG ath:AT5G57900; -.
NMPDR fig|3702.1.peg.27753; -.
Other
ProtoNet Q9FDX1.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome.
Features
SEVIEWER logo Feature table viewer
KeyFrom To Length Description FTId
CHAIN   1   300  300     Protein SKIP1. PRO_0000272203
Sequence information
Length: 300 AA [This is the length of the unprocessed precursor] Molecular weight: 34565 Da [This is the MW of the unprocessed precursor] CRC64: F629B3595DCF5EC5 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MEEDGSDWGG LAPEILINII SRLTIQELWT GPMFVQKSWL TVCRDPYLWS IFDLEPWFDS 

        70         80         90        100        110        120 
YPESTHLWSP EFEQKVDLML RSVVDWSEGG LTKIRVRHCS DHALSYAADR CPNLQVLAIR 

       130        140        150        160        170        180 
SSPNVTDASM TKIAFRCRSL KELDISYCHE ISHDTLVMIG RNCPNLRILK RNLMDWSSRH 

       190        200        210        220        230        240 
IGSVPTEYLD ACPQDGDTEA DAIGKHMINL EHLEIQFSRL SVKGLASICE GCPKLEYLDL 

       250        260        270        280        290        300 
FGCVHLSSRD ITSNVSRLKW LKEVKKPDVY VPRSGDVAQT ERYGHWRLYD ERFDIQAMRI 

Q9FDX1 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
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BLAST logo BLAST submission on ExPASy/SIB
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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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