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UniProtKB/Swiss-Prot entry Q9C6Z1


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name NCED5_ARATH
Primary accession number Q9C6Z1
Secondary accession numbers None
Integrated into Swiss-Prot on May 1, 2007
Sequence was last modified on June 1, 2001 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 31)
Name and origin of the protein
Protein name Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Precursor]
Synonyms AtNCED5
EC 1.13.11.51
Gene name
Name: NCED5
OrderedLocusNames: At1g30100
ORFNames: T2H7.10
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/35048500; PubMed=11130712 [NCBI, ExPASy, EBI, Israel, Japan]
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
Nature 408:816-820(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[3]
INDUCTION BY DROUGHT STRESS.
PubMed=11532178 [NCBI, ExPASy, EBI, Israel, Japan]
Iuchi S., Kobayashi M., Taji T., Naramoto M., Seki M., Kato T., Tabata S., Kakubari Y., Yamaguchi-Shinozaki K., Shinozaki K.;
"Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis.";
Plant J. 27:325-333(2001).
[4]
SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INDUCTION BY DROUGHT STRESS.
DOI=10.1046/j.1365-313X.2003.01786.x; PubMed=12834401 [NCBI, ExPASy, EBI, Israel, Japan]
Tan B.-C., Joseph L.M., Deng W.-T., Liu L., Li Q.-B., Cline K., McCarty D.R.;
"Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family.";
Plant J. 35:44-56(2003).
[5]
SUBCELLULAR LOCATION, AND INTERACTION WITH VAR3.
DOI=10.1242/jcs.01360; PubMed=15340011 [NCBI, ExPASy, EBI, Israel, Japan]
Naested H., Holm A., Jenkins T., Nielsen H.B., Harris C.A., Beale M.H., Andersen M., Mant A., Scheller H., Camara B., Mattsson O., Mundy J.;
"Arabidopsis VARIEGATED 3 encodes a chloroplast-targeted, zinc-finger protein required for chloroplast and palisade cell development.";
J. Cell Sci. 117:4807-4818(2004).
[6]
DEVELOPMENTAL STAGE, AND TISSUE SPECIFICITY.
DOI=10.1111/j.1365-313X.2005.02622.x; PubMed=16412079 [NCBI, ExPASy, EBI, Israel, Japan]
Lefebvre V., North H., Frey A., Sotta B., Seo M., Okamoto M., Nambara E., Marion-Poll A.;
"Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy.";
Plant J. 45:309-319(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AC074176; AAG50855.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK226774; BAE98872.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A86425; A86425.
RefSeq NP_174302.1; -.
UniGene At.51834
3D structure databases
ModBase Q9C6Z1.
Organism-specific databases
TAIR At1g30100; -.
Family and domain databases
InterPro IPR004294; Carotenoid_Oase.
Graphical view of domain structure.
PANTHER PTHR10543; Carotenoid_Oase; 1.
Pfam PF03055; RPE65; 1.
Pfam graphical view of domain structure.
BLOCKS Q9C6Z1.
Genome annotation databases
GeneID 839889; -.
GenomeReviews CT485782_GR; AT1G30100.
KEGG ath:AT1G30100; -.
NMPDR fig|3702.1.peg.3346; -.
Other
ProtoNet Q9C6Z1.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Abscisic acid biosynthesis; Chloroplast; Complete proteome; Dioxygenase; Membrane; Oxidoreductase; Plastid; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom  To Length Description FTId
TRANSIT   1    45  45     Chloroplast (Potential). 
CHAIN   46   589  544     Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic. PRO_0000285994
Sequence information
Length: 589 AA [This is the length of the unprocessed precursor] Molecular weight: 65337 Da [This is the MW of the unprocessed precursor] CRC64: 6A79B2BF7EAA8179 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN 

        70         80         90        100        110        120 
YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS KPLPKTVDPR HQISGNYAPV 

       130        140        150        160        170        180 
PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS 

       190        200        210        220        230        240 
CRFTETERLV QEKQLGSPIF PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG 

       250        260        270        280        290        300 
LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL 

       310        320        330        340        350        360 
SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF 

       370        380        390        400        410        420 
LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF HLWNAWESPE TDEVVVIGSC 

       430        440        450        460        470        480 
MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR 

       490        500        510        520        530        540 
YAYLAIAEPW PKVSGFAKVD LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF 

       550        560        570        580 
VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA 

Q9C6Z1 in FASTA format

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