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UniProtKB/Swiss-Prot entry Q8RYM9


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name LAC2_ORYSJ
Primary accession number Q8RYM9
Secondary accession number A2ZVR5
Integrated into Swiss-Prot on June 26, 2007
Sequence was last modified on June 1, 2002 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 43)
Name and origin of the protein
Protein name Laccase-2 [Precursor]
Synonyms EC 1.10.3.2
Benzenediol:oxygen oxidoreductase 2
Urishiol oxidase 2
Diphenol oxidase 2
Gene name
Name: LAC2
OrderedLocusNames: Os01g0634500, LOC_Os01g44330
ORFNames: P0663E10.27, OsJ_002637
From
Oryza sativa subsp. japonica (Rice) [TaxID: 39947] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1038/nature01184; PubMed=12447438 [NCBI, ExPASy, EBI, Israel, Japan]
Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
"The genome sequence and structure of rice chromosome 1.";
Nature 420:312-316(2002).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1371/journal.pbio.0030038; PubMed=15685292 [NCBI, ExPASy, EBI, Israel, Japan]
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AP004317; BAB90733.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
CM000138; EAZ12812.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
3D structure databases
HSSP Q9Y780; 1HFU. [HSSP ENTRY / PDB]
ModBase Q8RYM9.
Organism-specific databases
Gramene Q8RYM9; -.
Family and domain databases
InterPro IPR001117; Cu-oxidase.
IPR011706; Cu-oxidase_2.
IPR011707; Cu-oxidase_3.
IPR002355; Cu_oxidase_Cu_BS.
IPR008972; Cupredoxin.
IPR017761; Laccase.
Graphical view of domain structure.
Gene3D G3DSA:2.60.40.420; Cupredoxin; 3.
Pfam PF00394; Cu-oxidase; 1.
PF07731; Cu-oxidase_2; 1.
PF07732; Cu-oxidase_3; 1.
Pfam graphical view of domain structure.
PROSITE PS00079; MULTICOPPER_OXIDASE1; 1.
PS00080; MULTICOPPER_OXIDASE2; 1.
BLOCKS Q8RYM9.
Genome annotation databases
NMPDR fig|39947.1.peg.9914; -.
Other
ProtoNet Q8RYM9.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Apoplast; Copper; Glycoprotein; Lignin degradation; Metal-binding; Oxidoreductase; Repeat; Secreted; Signal.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    26  26     Potential. 
CHAIN   27   562  536     Laccase-2. PRO_0000291887
DOMAIN   34   150  117     Plastocyanin-like 1. 
DOMAIN   160   312  153     Plastocyanin-like 2. 
DOMAIN   411   546  136     Plastocyanin-like 3. 
METAL   84    84        Copper 1 (By similarity). 
METAL   86    86        Copper 2 (By similarity). 
METAL   129   129        Copper 2 (By similarity). 
METAL   131   131        Copper 3 (By similarity). 
METAL   463   463        Copper 4 (By similarity). 
METAL   466   466        Copper 1 (By similarity). 
METAL   468   468        Copper 3 (By similarity). 
METAL   525   525        Copper 3 (By similarity). 
METAL   526   526        Copper 4 (By similarity). 
METAL   527   527        Copper 2 (By similarity). 
METAL   531   531        Copper 4 (By similarity). 
CARBOHYD   39    39        N-linked (GlcNAc...) (Potential). 
CARBOHYD   53    53        N-linked (GlcNAc...) (Potential). 
CARBOHYD   72    72        N-linked (GlcNAc...) (Potential). 
CARBOHYD   80    80        N-linked (GlcNAc...) (Potential). 
CARBOHYD   118   118        N-linked (GlcNAc...) (Potential). 
CARBOHYD   189   189        N-linked (GlcNAc...) (Potential). 
CARBOHYD   244   244        N-linked (GlcNAc...) (Potential). 
CARBOHYD   300   300        N-linked (GlcNAc...) (Potential). 
CARBOHYD   328   328        N-linked (GlcNAc...) (Potential). 
CARBOHYD   376   376        N-linked (GlcNAc...) (Potential). 
CARBOHYD   386   386        N-linked (GlcNAc...) (Potential). 
CARBOHYD   421   421        N-linked (GlcNAc...) (Potential). 
CARBOHYD   445   445        N-linked (GlcNAc...) (Potential). 
CONFLICT   168   168        E -> D (in Ref. 2; EAZ12812). 
Sequence information
Length: 562 AA [This is the length of the unprocessed precursor] Molecular weight: 61296 Da [This is the MW of the unprocessed precursor] CRC64: 0BF4F84B9E7996A9 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MASAASSLPL LVSSLLLALF ALGAHADVKR YQFDIVMSNV SRLCHEKAMV TVNGSYPGPT 

        70         80         90        100        110        120 
IYAREGDRVI VNVTNHVKHN MTIHWHGLKQ RRNGWADGPA YVTQCPIGSG GSYVYDFNVT 

       130        140        150        160        170        180 
RQRGTLWWHA HIAWMRATVH GAIVILPAAG VPYPFPKPDD EAEIVLGEWW HADVETVERQ 

       190        200        210        220        230        240 
GSMLGMAPNM SDAHTINGKP GPLVPFCSEK HTYALQVQSG KTYLLRIINA AVNDELFFSI 

       250        260        270        280        290        300 
AGHNMTVVEI DATYTKPFAA STVQLSPGQT MNVLVSADQS PGRYFMVAKP FNDVPIPADN 

       310        320        330        340        350        360 
KTATAILQYA GVPTSVVPAL PQTMPATNST GSVAAFHDKL RSLNSPRYPA DVPLAVDRHL 

       370        380        390        400        410        420 
LYTIGLNIDP CETCLNRSRL AASLNNITFV MPRTALLQAH YYGQKGVFAA DFPDRPPARF 

       430        440        450        460        470        480 
NYTGVPLTAG LGTSLGTRLS KIAYNATVEL VLQDTNLLSV ESHPFHLHGY NFFVVGRGVG 

       490        500        510        520        530        540 
NFDPAKDPAK YNLVDPPERN TVGVPAGGWT AIRFRADNPG VWFLHCHLEV HTSWGLKMAF 

       550        560 
LVEDGSGPDE SVLPPPKDLP KC 

Q8RYM9 in FASTA format

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