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UniProtKB/Swiss-Prot entry Q67W29


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DAPB1_ORYSJ
Primary accession number Q67W29
Secondary accession number A3A6B8
Integrated into Swiss-Prot on October 23, 2007
Sequence was last modified on October 11, 2004 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 27)
Name and origin of the protein
Protein name Probable dihydrodipicolinate reductase 1, chloroplastic [Precursor]
Synonyms DHPR 1
EC 1.3.1.26
Gene name
Name: DAPB1
OrderedLocusNames: Os02g0436400, LOC_Os02g24020
ORFNames: OJ1126_B05.33, OsJ_006340
From
Oryza sativa subsp. japonica (Rice) [TaxID: 39947] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1038/nature03895; PubMed=16100779 [NCBI, ExPASy, EBI, Israel, Japan]
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[2]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
DOI=10.1101/gr.5509507; PubMed=17210932 [NCBI, ExPASy, EBI, Israel, Japan]
The rice annotation project (RAP);
"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.";
Genome Res. 17:175-183(2007).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1371/journal.pbio.0030038; PubMed=15685292 [NCBI, ExPASy, EBI, Israel, Japan]
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Nipponbare;
DOI=10.1126/science.1081288; PubMed=12869764 [NCBI, ExPASy, EBI, Israel, Japan]
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.";
Science 301:376-379(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AP004180; BAD37640.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP008208; BAF08650.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
CM000139; EAZ22857.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK065673; -; NOT_ANNOTATED_CDS; mRNA.[EMBL / GenBank / DDBJ]
RefSeq NP_001046736.1; -.
UniGene Os.4716
3D structure databases
ModBase Q67W29.
Organism-specific databases
Gramene Q67W29; -.
Ontologies
GO
GO:0009507; Cellular component: chloroplast (inferred from electronic annotation from InterPro).
GO:0005488; Molecular function: binding (inferred from electronic annotation from InterPro).
GO:0008839; Molecular function: dihydrodipicolinate reductase activity (inferred from electronic annotation from InterPro).
GO:0019877; Biological process: diaminopimelate biosynthetic process (inferred from electronic annotation from UniProtKB-KW).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR000846; DapB.
IPR011770; DapB_bac/pln.
IPR011859; DapB_pln.
IPR016040; NAD(P)-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.720; NAD(P)-bd; 1.
PANTHER PTHR20836; DapB_bac/pln; 1.
Pfam PF05173; DapB_C; 1.
PF01113; DapB_N; 1.
Pfam graphical view of domain structure.
ProDom PD004105; DapB; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR02130; dapB_plant; 1.
ProtoNet Q67W29.
Genome annotation databases
GeneID 4329224; -.
KEGG osa:4329224; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Amino-acid biosynthesis; Chloroplast; Diaminopimelate biosynthesis; Lysine biosynthesis; NADP; Oxidoreductase; Plastid; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom  To Length Description FTId
TRANSIT   1    14  14     Chloroplast (Potential). 
CHAIN   15   343  329     Probable dihydrodipicolinate reductase 1, chloroplastic. PRO_0000307185
Sequence information
Length: 343 AA [This is the length of the unprocessed precursor] Molecular weight: 37381 Da [This is the MW of the unprocessed precursor] CRC64: 93D85B900A9C247A [This is a checksum on the sequence]
        10         20         30         40         50         60 
MLASTFATHP AAAAAARRRG PIRWRLPFCS QIVTVTLRRR FPMARLSITN ALASQSLESA 

        70         80         90        100        110        120 
PAAPPKHSFP ILVNSCTGKM GKAVAEAAVS AGLQLVPVSF SAIEVPDGKV EICDREIYIR 

       130        140        150        160        170        180 
DPSEGESILP SIAKDYPDMI VVDYTVPDAV NANAELYCKL GLPFVMGTTG GNRQLLHKTV 

       190        200        210        220        230        240 
EDANVYAVIS PQMGKQVVAF LAAMEIMAEQ FPGAFSGYKL EVMESHQATK LDISGTAKAV 

       250        260        270        280        290        300 
ISCFQKLGVS FNLNEVKQVR DPQEQLTLVG VPEEHLSGHA FHMYHLTSPD ETVSFEFQHN 

       310        320        330        340 
VCGRSIYAEG TVDAALFLHK KIQSGANKKL YDMIDVLREG NMR 

Q67W29 in FASTA format

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View entry in raw text format (no links)
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