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UniProtKB/Swiss-Prot entry Q63716


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PRDX1_RAT
Primary accession number Q63716
Secondary accession numbers None
Integrated into Swiss-Prot on November 1, 1997
Sequence was last modified on November 1, 1996 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 76)
Name and origin of the protein
Protein name Peroxiredoxin-1
Synonyms EC 1.11.1.15
Thioredoxin peroxidase 2
Thioredoxin-dependent peroxide reductase 2
Heme-binding 23 kDa protein
HBP23
Gene name
Name: Prdx1
Synonyms: Tdpx2
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=Sprague-Dawley;
TISSUE=Liver;
DOI=10.1021/bi00041a017; PubMed=7577926 [NCBI, ExPASy, EBI, Israel, Japan]
Iwahara S., Satoh H., Song D.-X., Webb J., Burlingame A.L., Nagae Y., Mueller-Eberhard U.;
"Purification, characterization, and cloning of a heme-binding protein (23 kDa) in rat liver cytosol.";
Biochemistry 34:13398-13406(1995).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Liver, and Pituitary;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[3]
PROTEIN SEQUENCE OF 17-35 AND 111-190, AND MASS SPECTROMETRY.
STRAIN=Sprague-Dawley;
TISSUE=Brain, Hippocampus, and Spinal cord;
Lubec G., Afjehi-Sadat L., Diao W., Kang S.U.;
Submitted (JUL-2007) to UniProtKB.
[4]
X-RAY CRYSTALLOGRAPHY (2.6 ANGSTROMS) IN OXIDIZED FORM.
DOI=10.1073/pnas.96.22.12333; PubMed=10535922 [NCBI, ExPASy, EBI, Israel, Japan]
Hirotsu S., Abe Y., Okada K., Nagahara N., Hori H., Nishino T., Hakoshima T.;
"Crystal structure of a multifunctional 2-Cys peroxiredoxin heme-binding protein 23 kDa/proliferation-associated gene product.";
Proc. Natl. Acad. Sci. U.S.A. 96:12333-12338(1999).
Comments
  • FUNCTION: Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2).
  • CATALYTIC ACTIVITY: 2 R'-SH + ROOH = R'-S-S-R' + H2O + ROH.
  • SUBUNIT: Homodimer; disulfide-linked, upon oxidation. May form heterodimers with AOP2.
  • SUBCELLULAR LOCATION: Cytoplasm. Melanosome (By similarity).
  • PTM: Phosphorylated on Thr-90 during the M-phase, which leads to a more than 80% decrease in enzymatic activity (By similarity).
  • MISCELLANEOUS: The active site is the redox-active Cys-52 oxidized to Cys-SOH. Cys-SOH rapidly reacts with Cys-173-SH of the other subunit to form an intermolecular disulfide with a concomitant homodimer formation. The enzyme may be subsequently regenerated by reduction of the disulfide by thioredoxin.
  • MISCELLANEOUS: Inactivated upon oxidative stress by overoxidation of Cys-52 to Cys-SO(2)H and Cys-SO(3)H. Cys-SO(2)H is retroreduced to Cys-SOH after removal of H(2)O(2), while Cys-SO(3)H may be irreversibly oxidized.
  • SIMILARITY: Belongs to the ahpC/TSA family.
  • SIMILARITY: Contains 1 thioredoxin domain.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
D30035; BAA06275.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC058450; AAH58450.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC088118; AAH88118.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR I52425; I52425.
RefSeq NP_476455.1; -.
UniGene Rn.2845
3D structure databases
PDB
1QQ2; X-ray; 2.60 A; A/B=1-199.[ExPASy / RCSB / EBI]
2Z9S; X-ray; 2.90 A; A/B/C/D/E/F/G/H/I/J=1-199.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1QQ2; -.
2Z9S; -.
ModBase Q63716.
Protein-protein interaction databases
IntAct Q63716; -.
Protein family/group databases
PeroxiBase 4508; Rno2CysPrx01.
PTM databases
PhosphoSite Q63716; -.
Organism-specific databases
RGD 620039; Prdx1.
Gene expression databases
GermOnline ENSRNOG00000017194; Rattus norvegicus.
Ontologies
GO
GO:0042470; Cellular component: melanosome (inferred from electronic annotation from UniProtKB-SubCell).
QuickGo view.
Family and domain databases
InterPro IPR000866; AhpC-TSA.
IPR012335; Thioredoxin_fold.
Graphical view of domain structure.
Gene3D G3DSA:3.40.30.10; Thioredoxin_fold; 1.
Pfam PF00578; AhpC-TSA; 1.
Pfam graphical view of domain structure.
PROSITE PS51352; THIOREDOXIN_2; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q63716.
Genome annotation databases
Ensembl ENSRNOG00000017194; Rattus norvegicus. [Contig view]
GeneID 117254; -.
KEGG rno:117254; -.
NMPDR fig|10116.3.peg.23718; -.
Phylogenomic databases
HOVERGEN Q63716; -.
Other
ProtoNet Q63716.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Antioxidant; Cytoplasm; Direct protein sequencing; Oxidoreductase; Peroxidase; Phosphoprotein; Redox-active center.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   199  199     Peroxiredoxin-1. PRO_0000135078
DOMAIN   6   165  160     Thioredoxin. 
ACT_SITE   52    52        Cysteine sulfenic acid (-SOH) intermediate. 
MOD_RES   90    90        Phosphothreonine (By similarity). 
MOD_RES   183   183        Phosphothreonine (By similarity). 
MOD_RES   194   194        Phosphotyrosine (By similarity). 
DISULFID   52    52        Interchain (with C-173); in linked form. 
DISULFID   173   173        Interchain (with C-52); in linked form. 
STRAND   16    20  5      
STRAND   26    30  5      
HELIX   31    34  4      
STRAND   37    43  7      
STRAND   50    52  3      
HELIX   57    61  5      
HELIX   63    68  6      
STRAND   71    78  8      
HELIX   81    88  8      
HELIX   92    94  3      
STRAND   104   106  3      
HELIX   111   115  5      
STRAND   121   124  4      
STRAND   128   133  6      
STRAND   137   145  9      
HELIX   153   168  16      
STRAND   170   172  3      
Sequence information
Length: 199 AA [This is the length of the unprocessed precursor] Molecular weight: 22109 Da [This is the MW of the unprocessed precursor] CRC64: BDF2D4ABA8A776DA [This is a checksum on the sequence]
        10         20         30         40         50         60 
MSSGNAKIGH PAPSFKATAV MPDGQFKDIS LSDYKGKYVV FFFYPLDFTF VCPTEIIAFS 

        70         80         90        100        110        120 
DRAEEFKKLN CQVIGASVDS HFCHLAWINT PKKQGGLGPM NIPLVSDPKR TIAQDYGVLK 

       130        140        150        160        170        180 
ADEGISFRGL FIIDDKGILR QITINDLPVG RSVDEILRLV QAFQFTDKHG EVCPAGWKPG 

       190 
SDTIKPDVNK SKEYFSKQK 

Q63716 in FASTA format

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