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UniProtKB/Swiss-Prot entry Q61115


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PTC1_MOUSE
Primary accession number Q61115
Secondary accession numbers None
Integrated into Swiss-Prot on May 30, 2000
Sequence was last modified on November 1, 1996 (Sequence version 1)
Annotations were last modified on    June 16, 2009 (Entry version 72)
Name and origin of the protein
Protein name Protein patched homolog 1
Synonyms PTC1
PTC
Gene name
Name: Ptch1
Synonyms: Ptch
From
Mus musculus (Mouse) [TaxID: 10090] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Embryo;
PubMed=8595881 [NCBI, ExPASy, EBI, Israel, Japan]
Goodrich L.V., Johnson R.L., Milenkovic L., McMahon J.A., Scott M.P.;
"Conservation of the hedgehog/patched signaling pathway from flies to mice: induction of a mouse patched gene by Hedgehog.";
Genes Dev. 10:301-312(1996).
Comments
  • FUNCTION: Acts as a receptor for sonic hedgehog (SHH), indian hedgehog (IHH) and desert hedgehog (DHH). Associates with the smoothened protein (SMO) to transduce the hedgehog's proteins signal. Seems to have a tumor suppressor function, as inactivation of this protein is probably a necessary, if not sufficient step for tumorigenesis.
  • SUBUNIT: Interacts with SNX17 (By similarity).
  • SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein.
  • DEVELOPMENTAL STAGE: Expressed at low level at 7 dpc, higher level at 11 and 15 dpc, and persists at moderate levels at 17 dpc. In the developing embryo, PTC is first detected within the ventral neural tube and later in the somites and limb buds. Expression in the limb buds is restricted to the posterior ectoderm surrounding the zone of polarizing activity. In the adult, expression is seen in brain, lung, liver, kidney and ocular tissues; lower levels in heart, skeletal muscle, and testis.
  • INDUCTION: Activated by Sonic hedgehog.
  • PTM: Glycosylation is necessary for SHH binding (By similarity).
  • SIMILARITY: Belongs to the patched family.
  • SIMILARITY: Contains 1 SSD (sterol-sensing) domain.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U46155; AAC98798.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
IPI IPI00117758; -.
PIR T30172; T30172.
RefSeq NP_032983.1; -.
UniGene Mm.228798
3D structure databases
ModBase Q61115.
PTM databases
PhosphoSite Q61115; -.
Organism-specific databases
MGI MGI:105373; Ptch1.
Gene expression databases
ArrayExpress Q61115; -.
Bgee Q61115; -.
CleanEx MM_PTCH1; -.
GermOnline ENSMUSG00000021466; Mus musculus.
Ontologies
GO
GO:0005576; Cellular component: extracellular region (traceable author statement from Roslin).
GO:0005887; Cellular component: integral to plasma membrane (traceable author statement from MGI).
GO:0015485; Molecular function: cholesterol binding (traceable author statement from Roslin).
GO:0008158; Molecular function: hedgehog receptor activity (traceable author statement from MGI).
GO:0008201; Molecular function: heparin binding (inferred from direct assay from Roslin).
GO:0005113; Molecular function: patched binding (inferred from direct assay from Roslin).
GO:0008270; Molecular function: zinc ion binding (non-traceable author statement from Roslin).
GO:0021904; Biological process: dorsal/ventral neural tube patterning (inferred from mutant phenotype from MGI).
GO:0030326; Biological process: embryonic limb morphogenesis (inferred from mutant phenotype from MGI).
GO:0008544; Biological process: epidermis development (inferred from mutant phenotype from MGI).
GO:0042593; Biological process: glucose homeostasis (inferred from mutant phenotype from MGI).
GO:0003007; Biological process: heart morphogenesis (inferred from mutant phenotype from MGI).
GO:0035137; Biological process: hindlimb morphogenesis (inferred from mutant phenotype from MGI).
GO:0043616; Biological process: keratinocyte proliferation (inferred from mutant phenotype from MGI).
GO:0030879; Biological process: mammary gland development (inferred from mutant phenotype from MGI).
GO:0050680; Biological process: negative regulation of epithelial cell proliferation (inferred from mutant phenotype from MGI).
GO:0040015; Biological process: negative regulation of multicellular organism growth (inferred from mutant phenotype from MGI).
GO:0001843; Biological process: neural tube closure (inferred from mutant phenotype from MGI).
GO:0016485; Biological process: protein processing (inferred from mutant phenotype from MGI).
GO:0008589; Biological process: regulation of smoothened signaling pathway (inferred from mutant phenotype from MGI).
GO:0007224; Biological process: smoothened signaling pathway (inferred from direct assay from MGI).
QuickGo view.
Family and domain databases
InterPro IPR003392; Patched.
IPR000731; SSD_5TM.
IPR004766; TM_rcpt_patched.
Graphical view of domain structure.
Pfam PF02460; Patched; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR00918; 2A060602; 1.
PROSITE PS50156; SSD; 1.
PROSITE graphical view of domain structure (profiles).
Proteomic databases
PRIDE Q61115; -.
Genome annotation databases
Ensembl ENSMUSG00000021466; Mus musculus. [Contig view]
GeneID 19206; -.
KEGG mmu:19206; -.
Phylogenomic databases
HOGENOM Q61115; -.
HOVERGEN Q61115; -.
OMA Q61115; SYCDAAF.
Other
NextBio 295938; -.
SOURCE Ptch1; Mus musculus.
ProtoNet Q61115.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Glycoprotein; Membrane; Receptor; Transmembrane.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom    To Length Description FTId
CHAIN   1   1434  1434     Protein patched homolog 1. PRO_0000205965
TOPO_DOM   1     86  86     Cytoplasmic (Potential). 
TRANSMEM   87    107  21     Potential. 
TOPO_DOM   108    422  315     Extracellular (Potential). 
TRANSMEM   423    443  21     Potential. 
TOPO_DOM   444    458  15     Cytoplasmic (Potential). 
TRANSMEM   459    479  21     Potential. 
TOPO_DOM   480    487  8     Extracellular (Potential). 
TRANSMEM   488    508  21     Potential. 
TOPO_DOM   509    533  25     Cytoplasmic (Potential). 
TRANSMEM   534    554  21     Potential. 
TOPO_DOM   555    563  9     Extracellular (Potential). 
TRANSMEM   564    584  21     Potential. 
TOPO_DOM   585    734  150     Cytoplasmic (Potential). 
TRANSMEM   735    755  21     Potential. 
TOPO_DOM   756   1013  258     Extracellular (Potential). 
TRANSMEM   1014   1034  21     Potential. 
TOPO_DOM   1035   1039  5     Cytoplasmic (Potential). 
TRANSMEM   1040   1060  21     Potential. 
TOPO_DOM   1061   1069  9     Extracellular (Potential). 
TRANSMEM   1070   1090  21     Potential. 
TOPO_DOM   1091   1107  17     Cytoplasmic (Potential). 
TRANSMEM   1108   1128  21     Potential. 
TOPO_DOM   1129   1140  12     Extracellular (Potential). 
TRANSMEM   1141   1161  21     Potential. 
TOPO_DOM   1162   1434  273     Cytoplasmic (Potential). 
DOMAIN   424    584  161     SSD. 
CARBOHYD   127    127        N-linked (GlcNAc...) (Potential). 
CARBOHYD   298    298        N-linked (GlcNAc...) (Potential). 
CARBOHYD   335    335        N-linked (GlcNAc...) (Potential). 
CARBOHYD   400    400        N-linked (GlcNAc...) (Potential). 
CARBOHYD   861    861        N-linked (GlcNAc...) (Potential). 
CARBOHYD   986    986        N-linked (GlcNAc...) (Potential). 
Sequence information
Length: 1434 AA [This is the length of the unprocessed precursor] Molecular weight: 159273 Da [This is the MW of the unprocessed precursor] CRC64: A5E9189E633173D0 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MASAGNAAGA LGRQAGGGRR RRTGGPHRAA PDRDYLHRPS YCDAAFALEQ ISKGKATGRK 

        70         80         90        100        110        120 
APLWLRAKFQ RLLFKLGCYI QKNCGKFLVV GLLIFGAFAV GLKAANLETN VEELWVEVGG 

       130        140        150        160        170        180 
RVSRELNYTR QKIGEEAMFN PQLMIQTPKE EGANVLTTEA LLQHLDSALQ ASRVHVYMYN 

       190        200        210        220        230        240 
RQWKLEHLCY KSGELITETG YMDQIIEYLY PCLIITPLDC FWEGAKLQSG TAYLLGKPPL 

       250        260        270        280        290        300 
RWTNFDPLEF LEELKKINYQ VDSWEEMLNK AEVGHGYMDR PCLNPADPDC PATAPNKNST 

       310        320        330        340        350        360 
KPLDVALVLN GGCQGLSRKY MHWQEELIVG GTVKNATGKL VSAHALQTMF QLMTPKQMYE 

       370        380        390        400        410        420 
HFRGYDYVSH INWNEDRAAA ILEAWQRTYV EVVHQSVAPN STQKVLPFTT TTLDDILKSF 

       430        440        450        460        470        480 
SDVSVIRVAS GYLLMLAYAC LTMLRWDCSK SQGAVGLAGV LLVALSVAAG LGLCSLIGIS 

       490        500        510        520        530        540 
FNAATTQVLP FLALGVGVDD VFLLAHAFSE TGQNKRIPFE DRTGECLKRT GASVALTSIS 

       550        560        570        580        590        600 
NVTAFFMAAL IPIPALRAFS LQAAVVVVFN FAMVLLIFPA ILSMDLYRRE DRRLDIFCCF 

       610        620        630        640        650        660 
TSPCVSRVIQ VEPQAYTEPH SNTRYSPPPP YTSHSFAHET HITMQSTVQL RTEYDPHTHV 

       670        680        690        700        710        720 
YYTTAEPRSE ISVQPVTVTQ DNLSCQSPES TSSTRDLLSQ FSDSSLHCLE PPCTKWTLSS 

       730        740        750        760        770        780 
FAEKHYAPFL LKPKAKVVVI LLFLGLLGVS LYGTTRVRDG LDLTDIVPRE TREYDFIAAQ 

       790        800        810        820        830        840 
FKYFSFYNMY IVTQKADYPN IQHLLYDLHK SFSNVKYVML EENKQLPQMW LHYFRDWLQG 

       850        860        870        880        890        900 
LQDAFDSDWE TGRIMPNNYK NGSDDGVLAY KLLVQTGSRD KPIDISQLTK QRLVDADGII 

       910        920        930        940        950        960 
NPSAFYIYLT AWVSNDPVAY AASQANIRPH RPEWVHDKAD YMPETRLRIP AAEPIEYAQF 

       970        980        990       1000       1010       1020 
PFYLNGLRDT SDFVEAIEKV RVICNNYTSL GLSSYPNGYP FLFWEQYISL RHWLLLSISV 

      1030       1040       1050       1060       1070       1080 
VLACTFLVCA VFLLNPWTAG IIVMVLALMT VELFGMMGLI GIKLSAVPVV ILIASVGIGV 

      1090       1100       1110       1120       1130       1140 
EFTVHVALAF LTAIGDKNHR AMLALEHMFA PVLDGAVSTL LGVLMLAGSE FDFIVRYFFA 

      1150       1160       1170       1180       1190       1200 
VLAILTVLGV LNGLVLLPVL LSFFGPCPEV SPANGLNRLP TPSPEPPPSV VRFAVPPGHT 

      1210       1220       1230       1240       1250       1260 
NNGSDSSDSE YSSQTTVSGI SEELRQYEAQ QGAGGPAHQV IVEATENPVF ARSTVVHPDS 

      1270       1280       1290       1300       1310       1320 
RHQPPLTPRQ QPHLDSGSLS PGRQGQQPRR DPPREGLRPP PYRPRRDAFE ISTEGHSGPS 

      1330       1340       1350       1360       1370       1380 
NRDRSGPRGA RSHNPRNPTS TAMGSSVPSY CQPITTVTAS ASVTVAVHPP PGPGRNPRGG 

      1390       1400       1410       1420       1430 
PCPGYESYPE TDHGVFEDPH VPFHVRCERR DSKVEVIELQ DVECEERPWG SSSN 

Q61115 in FASTA format

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