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UniProtKB/Swiss-Prot entry Q5N9X2


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name LAC4_ORYSJ
Primary accession number Q5N9X2
Secondary accession numbers A2ZZG8 O49232
Integrated into Swiss-Prot on June 26, 2007
Sequence was last modified on February 1, 2005 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 31)
Name and origin of the protein
Protein name Laccase-4 [Precursor]
Synonyms EC 1.10.3.2
Benzenediol:oxygen oxidoreductase 4
Urishiol oxidase 4
Diphenol oxidase 4
Gene name
Name: LAC4
OrderedLocusNames: Os01g0842400, LOC_Os01g62480
ORFNames: P0406G08.11, OsJ_003940
From
Oryza sativa subsp. japonica (Rice) [TaxID: 39947] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1038/nature01184; PubMed=12447438 [NCBI, ExPASy, EBI, Israel, Japan]
Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M., Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
"The genome sequence and structure of rice chromosome 1.";
Nature 420:312-316(2002).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1038/nature03895; PubMed=16100779 [NCBI, ExPASy, EBI, Israel, Japan]
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[3]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
DOI=10.1101/gr.5509507; PubMed=17210932 [NCBI, ExPASy, EBI, Israel, Japan]
The rice annotation project (RAP);
"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.";
Genome Res. 17:175-183(2007).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1371/journal.pbio.0030038; PubMed=15685292 [NCBI, ExPASy, EBI, Israel, Japan]
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Nipponbare;
DOI=10.1126/science.1081288; PubMed=12869764 [NCBI, ExPASy, EBI, Israel, Japan]
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.";
Science 301:376-379(2003).
[6]
NUCLEOTIDE SEQUENCE [MRNA] OF 36-579.
STRAIN=cv. Nipponbare;
TISSUE=Shoot;
DOI=10.1023/A:1026437406859; PubMed=10394942 [NCBI, ExPASy, EBI, Israel, Japan]
LaFayette P.R., Eriksson K.E., Dean J.F.;
"Characterization and heterologous expression of laccase cDNAs from xylem tissues of yellow-poplar (Liriodendron tulipifera).";
Plant Mol. Biol. 40:23-35(1999).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AP003240; BAD81734.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP008207; BAF06686.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
CM000138; EAZ14115.1; ALT_INIT; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK068901; -; NOT_ANNOTATED_CDS; mRNA.[EMBL / GenBank / DDBJ]
AF047697; AAC04576.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR T02752; T02752.
RefSeq NP_001044772.1; -.
UniGene Os.12346
3D structure databases
ModBase Q5N9X2.
Organism-specific databases
Gramene Q5N9X2; -.
Family and domain databases
InterPro IPR001117; Cu-oxidase.
IPR011706; Cu-oxidase_2.
IPR011707; Cu-oxidase_3.
IPR002355; Cu_oxidase_Cu_BS.
IPR008972; Cupredoxin.
IPR017761; Laccase.
Graphical view of domain structure.
Gene3D G3DSA:2.60.40.420; Cupredoxin; 3.
Pfam PF00394; Cu-oxidase; 1.
PF07731; Cu-oxidase_2; 1.
PF07732; Cu-oxidase_3; 1.
Pfam graphical view of domain structure.
PROSITE PS00079; MULTICOPPER_OXIDASE1; 1.
PS00080; MULTICOPPER_OXIDASE2; 1.
BLOCKS Q5N9X2.
Genome annotation databases
GeneID 4327500; -.
KEGG osa:4327500; -.
NMPDR fig|39947.1.peg.7509; -.
Other
ProtoNet Q5N9X2.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Apoplast; Copper; Glycoprotein; Lignin degradation; Metal-binding; Oxidoreductase; Repeat; Secreted; Signal.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    28  28     Potential. 
CHAIN   29   579  551     Laccase-4. PRO_0000291889
DOMAIN   36   152  117     Plastocyanin-like 1. 
DOMAIN   162   316  155     Plastocyanin-like 2. 
DOMAIN   429   563  135     Plastocyanin-like 3. 
METAL   86    86        Copper 1 (By similarity). 
METAL   88    88        Copper 2 (By similarity). 
METAL   131   131        Copper 2 (By similarity). 
METAL   133   133        Copper 3 (By similarity). 
METAL   480   480        Copper 4 (By similarity). 
METAL   483   483        Copper 1 (By similarity). 
METAL   485   485        Copper 3 (By similarity). 
METAL   542   542        Copper 3 (By similarity). 
METAL   543   543        Copper 4 (By similarity). 
METAL   544   544        Copper 2 (By similarity). 
METAL   548   548        Copper 4 (By similarity). 
CARBOHYD   41    41        N-linked (GlcNAc...) (Potential). 
CARBOHYD   82    82        N-linked (GlcNAc...) (Potential). 
CARBOHYD   118   118        N-linked (GlcNAc...) (Potential). 
CARBOHYD   191   191        N-linked (GlcNAc...) (Potential). 
CARBOHYD   207   207        N-linked (GlcNAc...) (Potential). 
CARBOHYD   243   243        N-linked (GlcNAc...) (Potential). 
CARBOHYD   304   304        N-linked (GlcNAc...) (Potential). 
CARBOHYD   340   340        N-linked (GlcNAc...) (Potential). 
CARBOHYD   347   347        N-linked (GlcNAc...) (Potential). 
CARBOHYD   386   386        N-linked (GlcNAc...) (Potential). 
CARBOHYD   393   393        N-linked (GlcNAc...) (Potential). 
CARBOHYD   403   403        N-linked (GlcNAc...) (Potential). 
CARBOHYD   439   439        N-linked (GlcNAc...) (Potential). 
CARBOHYD   446   446        N-linked (GlcNAc...) (Potential). 
CARBOHYD   462   462        N-linked (GlcNAc...) (Potential). 
Sequence information
Length: 579 AA [This is the length of the unprocessed precursor] Molecular weight: 63052 Da [This is the MW of the unprocessed precursor] CRC64: 2480C6A730DC02F3 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MTMAISSALP SPLLLAASLL LLIVQAQGIT RHYEFNVQMA NATRLCNTKS MVTVNGQCPG 

        70         80         90        100        110        120 
PELVAREGDR VVIRVTNNVA HNISLHWHGV RQVRTGWADG PAYITQCPIQ TGQSYVYNFT 

       130        140        150        160        170        180 
VAGQRGTLWW HAHISWLRAT VYGALVILPK LGVPYPFPAP HKEVPVIFGE WWNADTEEVV 

       190        200        210        220        230        240 
NQAVQTGGGP NVSDAFTING LPGPLYNCSA QDTFKLKVKP GKTYMLRLIN AALNEELFFA 

       250        260        270        280        290        300 
VANHTLTVVE VDAVYVKPFT VDTLVISPGQ TTNVLLTAKP YYPGANFYMS AAPYSTARPG 

       310        320        330        340        350        360 
TFGNTTVAGI LEYENPAMSP SAASFVKGLP LFKPTLPQLN DTDFVTNFTD KLRSLATPEY 

       370        380        390        400        410        420 
PAAVPQSVDK RFFFTVGLGT LPCPANMTCQ GPNNTQMAAS MNNVSFVLPA RALLQSHFTG 

       430        440        450        460        470        480 
LSSGVYAPDF PVAPLSPFNY TGTPPNNTNV KTGTKLLVLR YNTSVELVMQ DTSILGIESH 

       490        500        510        520        530        540 
PLHLHGFNFF VIGQGFGNYD AVNDPAKFNL VDPVERNTVG VPAGGWVAIR FLADNPGVWF 

       550        560        570 
MHCHLEAHTT WGLRMAWLVL DGSHPNQKLL PPPSDLPKC 

Q5N9X2 in FASTA format

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