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UniProtKB/Swiss-Prot entry Q56221


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name NQO2_THET8
Primary accession number Q56221
Secondary accession number Q5SM55
Integrated into Swiss-Prot on November 1, 1997
Sequence was last modified on January 23, 2007 (Sequence version 3)
Annotations were last modified on    July 22, 2008 (Entry version 61)
Name and origin of the protein
Protein name NADH-quinone oxidoreductase subunit 2
Synonyms EC 1.6.99.5
NADH dehydrogenase I chain 2
NDH-1 subunit 2
Gene name
Name: nqo2
OrderedLocusNames: TTHA0088
From
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [TaxID: 300852] [HAMAP proteome]
Taxonomy Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND CHARACTERIZATION.
DOI=10.1074/jbc.272.7.4201; PubMed=9020134 [NCBI, ExPASy, EBI, Israel, Japan]
Yano T., Chu S.S., Sled' V.D., Ohnishi T., Yagi T.;
"The proton-translocating NADH-quinone oxidoreductase (NDH-1) of thermophilic bacterium Thermus thermophilus HB-8. Complete DNA sequence of the gene cluster and thermostable properties of the expressed NQO2 subunit.";
J. Biol. Chem. 272:4201-4211(1997).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.;
"Complete genome sequence of Thermus thermophilus HB8.";
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
[3]
PROTEIN SEQUENCE OF 2-9, IDENTIFICATION BY MASS SPECTROMETRY, EPR SPECTROSCOPY, AND SUBUNIT.
DOI=10.1021/bi0600998; PubMed=16584177 [NCBI, ExPASy, EBI, Israel, Japan]
Hinchliffe P., Carroll J., Sazanov L.A.;
"Identification of a novel subunit of respiratory complex I from Thermus thermophilus.";
Biochemistry 45:4413-4420(2006).
[4]
X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS), SUBUNIT, AND ELECTRON TRANSFER MECHANISM.
DOI=10.1126/science.1123809; PubMed=16469879 [NCBI, ExPASy, EBI, Israel, Japan]
Sazanov L.A., Hinchliffe P.;
"Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus.";
Science 311:1430-1436(2006).
Comments
  • FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient required for the synthesis of ATP.
  • CATALYTIC ACTIVITY: NADH + quinone = NAD+ + quinol.
  • COFACTOR: Binds 1 2Fe-2S cluster. This 2Fe-2S cluster is referred to as N1a.
  • SUBUNIT: NDH-1 is composed of 15 different subunits, nqo1 to nqo15. The complex has a L-shaped structure, with the hydrophobic arm (subunits nqo7, nqo8 and nqo10 to nqo14) embedded in the membrane and the hydrophilic peripheral arm (subunits nqo1 to nqo6, nqo9 and nqo15) protruding into the bacterial cytoplasm. The hydrophilic domain contains all the redox centers.
  • SUBCELLULAR LOCATION: Cell membrane; Peripheral membrane protein; Cytoplasmic side.
  • DOMAIN: The subunit can be divided into two domains: an N-terminal four-helical bundle (residues 2 to 74) involved in interactions with subunits nqo1 and nqo3, and a thioredoxin-like C-terminal domain (residues 75 to 180) that coordinates the binuclear cluster N1a.
  • SIMILARITY: Belongs to the complex I 24 kDa subunit family.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U52917; AAA97942.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP008226; BAD69911.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR T11902; T11902.
RefSeq YP_143354.1; -.
3D structure databases
PDB
2FUG; X-ray; 3.30 A; 2/B/K/T=1-181.[ExPASy / RCSB / EBI]
PDBsum 2FUG; -.
ModBase Q56221.
Enzyme and pathway databases
BioCyc TTHE300852:TTHA0088-MON; -.
Ontologies
GO
GO:0005886; Cellular component: plasma membrane (inferred from electronic annotation from UniProtKB-SubCell).
GO:0050136; Molecular function: NADH dehydrogenase (quinone) activity (inferred from electronic annotation from EC).
QuickGo view.
Family and domain databases
InterPro IPR002023; NADH_DHase_Ub_24kDa_su.
IPR012335; Thioredoxin_fold.
Graphical view of domain structure.
Gene3D G3DSA:3.40.30.10; Thioredoxin_fold; 1.
PANTHER PTHR10371; Cmplx1_24kDa; 1.
Pfam PF01257; Complex1_24kDa; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF000216; NADH_DH_24kDa; 1.
ProDom PD003859; Cmplx1_24kDa; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR01958; nuoE_fam; 1.
PROSITE PS01099; COMPLEX1_24K; 1.
BLOCKS Q56221.
Genome annotation databases
GeneID 3168326; -.
GenomeReviews AP008226_GR; TTHA0088.
KEGG ttj:TTHA0088; -.
Phylogenomic databases
HOGENOM Q56221; -.
Other
LinkHub Q56221; -.
Genome annotation databases
CMR Q56221; TTHA0088.
Other
ProtoNet Q56221.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
2Fe-2S; 3D-structure; Cell membrane; Complete proteome; Direct protein sequencing; Iron; Iron-sulfur; Membrane; Metal-binding; NAD; Oxidoreductase; Quinone.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
INIT_MET   1     1        Removed. 
CHAIN   2   181  180     NADH-quinone oxidoreductase subunit 2. PRO_0000118686
METAL   83    83        Iron-sulfur (2Fe-2S). 
METAL   88    88        Iron-sulfur (2Fe-2S). 
METAL   124   124        Iron-sulfur (2Fe-2S). 
METAL   128   128        Iron-sulfur (2Fe-2S). 
DISULFID   144   172         
TURN   4     7  4      
HELIX   8    16  9      
HELIX   23    26  4      
HELIX   27    38  12      
HELIX   43    53  11      
HELIX   57    66  10      
STRAND   67    70  4      
STRAND   77    83  7      
HELIX   86    89  4      
TURN   90    92  3      
HELIX   93   104  12      
STRAND   117   123  7      
STRAND   130   132  3      
STRAND   137   141  5      
HELIX   147   158  12      
HELIX   163   165  3      
STRAND   174   176  3      
Sequence information
Length: 181 AA [This is the length of the unprocessed precursor] Molecular weight: 20286 Da [This is the MW of the unprocessed precursor] CRC64: 484FE09245C613EE [This is a checksum on the sequence]
        10         20         30         40         50         60 
MGFFDDKQDF LEETFAKYPP EGRRAAIMPL LRRVQQEEGW IRPERIEEIA RLVGTTPTEV 

        70         80         90        100        110        120 
MGVASFYSYY QFVPTGKYHL QVCATLSCKL AGAEELWDYL TETLGIGPGE VTPDGLFSVQ 

       130        140        150        160        170        180 
KVECLGSCHT APVIQVNDEP YVECVTRARL EALLAGLRAG KRLEEIELPG KCGHHVHEVE 


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Q56221 in FASTA format

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