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UniProtKB/Swiss-Prot entry Q56220


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name NQO4_THET8
Primary accession number Q56220
Secondary accession number Q5SM56
Integrated into Swiss-Prot on November 1, 1997
Sequence was last modified on November 1, 1997 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 54)
Name and origin of the protein
Protein name NADH-quinone oxidoreductase subunit 4
Synonyms EC 1.6.99.5
NADH dehydrogenase I chain 4
NDH-1 subunit 4
Gene name
Name: nqo4
OrderedLocusNames: TTHA0087
From
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [TaxID: 300852] [HAMAP proteome]
Taxonomy Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1074/jbc.272.7.4201; PubMed=9020134 [NCBI, ExPASy, EBI, Israel, Japan]
Yano T., Chu S.S., Sled' V.D., Ohnishi T., Yagi T.;
"The proton-translocating NADH-quinone oxidoreductase (NDH-1) of thermophilic bacterium Thermus thermophilus HB-8. Complete DNA sequence of the gene cluster and thermostable properties of the expressed NQO2 subunit.";
J. Biol. Chem. 272:4201-4211(1997).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.;
"Complete genome sequence of Thermus thermophilus HB8.";
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases.
[3]
PROTEIN SEQUENCE OF 1-8, IDENTIFICATION BY MASS SPECTROMETRY, AND SUBUNIT.
DOI=10.1021/bi0600998; PubMed=16584177 [NCBI, ExPASy, EBI, Israel, Japan]
Hinchliffe P., Carroll J., Sazanov L.A.;
"Identification of a novel subunit of respiratory complex I from Thermus thermophilus.";
Biochemistry 45:4413-4420(2006).
[4]
X-RAY CRYSTALLOGRAPHY (3.3 ANGSTROMS), SUBUNIT, AND ELECTRON TRANSFER MECHANISM.
DOI=10.1126/science.1123809; PubMed=16469879 [NCBI, ExPASy, EBI, Israel, Japan]
Sazanov L.A., Hinchliffe P.;
"Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus.";
Science 311:1430-1436(2006).
Comments
  • FUNCTION: NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient required for the synthesis of ATP. The nqo4 subunit may contain the quinone-binding site.
  • CATALYTIC ACTIVITY: NADH + quinone = NAD+ + quinol.
  • SUBUNIT: NDH-1 is composed of 15 different subunits, nqo1 to nqo15. The complex has a L-shaped structure, with the hydrophobic arm (subunits nqo7, nqo8 and nqo10 to nqo14) embedded in the membrane and the hydrophilic peripheral arm (subunits nqo1 to nqo6, nqo9 and nqo15) protruding into the bacterial cytoplasm. The hydrophilic domain contains all the redox centers. Subunit nqo4 interacts extensively with nqo6.
  • SUBCELLULAR LOCATION: Cell membrane; Peripheral membrane protein; Cytoplasmic side.
  • SIMILARITY: Belongs to the complex I 49 kDa subunit family.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U52917; AAA97941.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP008226; BAD69910.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR T11901; T11901.
RefSeq YP_143353.1; -.
3D structure databases
PDB
2FUG; X-ray; 3.30 A; 4/D/M/V=1-409.[ExPASy / RCSB / EBI]
PDBsum 2FUG; -.
ModBase Q56220.
Enzyme and pathway databases
BioCyc TTHE300852:TTHA0087-MON; -.
Family and domain databases
InterPro IPR014029; NADH-UbQ_OxRdtase_49kDa_CS.
IPR010219; NADH_DH_1_dsu.
IPR001135; NADH_UbQ_OxRdtase_49kDa.
Graphical view of domain structure.
Pfam PF00346; Complex1_49kDa; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01962; NuoD; 1.
PROSITE PS00535; COMPLEX1_49K; 1.
BLOCKS Q56220.
Genome annotation databases
GeneID 3168206; -.
GenomeReviews AP008226_GR; TTHA0087.
KEGG ttj:TTHA0087; -.
NMPDR fig|300852.3.peg.118; -.
Phylogenomic databases
HOGENOM Q56220; -.
Genome annotation databases
CMR Q56220; TTHA0087.
Other
ProtoNet Q56220.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Cell membrane; Complete proteome; Direct protein sequencing; Membrane; NAD; Oxidoreductase; Quinone.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   409  409     NADH-quinone oxidoreductase subunit 4. PRO_0000118617
STRAND   36    38  3      
STRAND   40    42  3      
STRAND   44    47  4      
STRAND   50    52  3      
STRAND   55    58  4      
HELIX   66    69  4      
HELIX   70    72  3      
HELIX   75    81  7      
HELIX   82    84  3      
STRAND   87    89  3      
HELIX   90   104  15      
HELIX   111   140  30      
HELIX   143   163  21      
STRAND   165   169  5      
STRAND   177   180  4      
HELIX   186   193  8      
TURN   194   201  8      
HELIX   202   208  7      
STRAND   224   226  3      
TURN   229   234  6      
TURN   245   249  5      
STRAND   269   272  4      
HELIX   273   295  23      
TURN   307   309  3      
TURN   317   319  3      
HELIX   323   332  10      
STRAND   349   351  3      
STRAND   355   358  4      
STRAND   361   364  4      
STRAND   366   370  5      
HELIX   374   377  4      
TURN   378   380  3      
HELIX   381   384  4      
TURN   385   387  3      
HELIX   390   392  3      
HELIX   395   398  4      
HELIX   404   408  5      
Sequence information
Length: 409 AA [This is the length of the unprocessed precursor] Molecular weight: 46371 Da [This is the MW of the unprocessed precursor] CRC64: 161AA0C796D62ED3 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MREEFLEEIP LDAPPEEAKE LRTEVMTLNV GPQHPSTHGV LRLMVTLSGE EVLEVVPHIG 

        70         80         90        100        110        120 
YLHTGFEKTM EHRTYLQNIT YTPRMDYLHS FAHDLAYALA VEKLLGAVVP PRAETIRVIL 

       130        140        150        160        170        180 
NELSRLASHL VFLGTGLLDL GALTPFFYAF RERETILDLF EWVTGQRFHH NYIRIGGVKE 

       190        200        210        220        230        240 
DLPEEFVPEL KKLLEVLPHR IDEYEALFAE SPIFYERARG VGVIPPEVAI DLGLTGGSLR 

       250        260        270        280        290        300 
ASGVNYDVRK AYPYSGYETY TFDVPLGERG DVFDRMLVRI REMRESVKII KQALERLEPG 

       310        320        330        340        350        360 
PVRDPNPQIT PPPRHLLETS MEAVIYHFKH YTEGFHPPKG EVYVPTESAR GELGYYIVSD 

       370        380        390        400 
GGSMPYRVKV RAPSFVNLQS LPYACKGEQV PDMVAIIASL DPVMGDVDR 

Q56220 in FASTA format

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