ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry Q556W1


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name OXDD_DICDI
Primary accession number Q556W1
Secondary accession number Q86JV2
Integrated into Swiss-Prot on April 8, 2008
Sequence was last modified on May 24, 2005 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 24)
Name and origin of the protein
Protein name D-aspartate oxidase
Synonyms DASOX
EC 1.4.3.1
DDO
Gene names
Name: ddo-1
ORFNames: DDB_0238432
and
Name: ddo-2
ORFNames: DDB_0238431
From
Dictyostelium discoideum (Slime mold) [TaxID: 44689] 
Taxonomy Eukaryota; Mycetozoa; Dictyosteliida; Dictyostelium.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=AX4;
DOI=10.1038/nature00847; PubMed=12097910 [NCBI, ExPASy, EBI, Israel, Japan]
Gloeckner G., Eichinger L., Szafranski K., Pachebat J.A., Bankier A.T., Dear P.H., Lehmann R., Baumgart C., Parra G., Abril J.F., Guigo R., Kumpf K., Tunggal B., Cox E.C., Quail M.A., Platzer M., Rosenthal A., Noegel A.A.;
"Sequence and analysis of chromosome 2 of Dictyostelium discoideum.";
Nature 418:79-85(2002).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=AX4;
DOI=10.1038/nature03481; PubMed=15875012 [NCBI, ExPASy, EBI, Israel, Japan]
Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R., Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B., Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T., Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E.J., Davis P., Kerhornou A., Nie X., Hall N., Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E., Morio T., Rost R., Churcher C.M., Cooper J., Haydock S., van Driessche N., Cronin A., Goodhead I., Muzny D.M., Mourier T., Pain A., Lu M., Harper D., Lindsay R., Hauser H., James K.D., Quiles M., Madan Babu M., Saito T., Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D., Knights A., Loulseged H., Mungall K.L., Oliver K., Price C., Quail M.A., Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Ma J., Kohara Y., Sharp S., Simmonds M.N., Spiegler S., Tivey A., Sugano S., White B., Walker D., Woodward J.R., Winckler T., Tanaka Y., Shaulsky G., Schleicher M., Weinstock G.M., Rosenthal A., Cox E.C., Chisholm R.L., Gibbs R.A., Loomis W.F., Platzer M., Kay R.R., Williams J.G., Dear P.H., Noegel A.A., Barrell B.G., Kuspa A.;
"The genome of the social amoeba Dictyostelium discoideum.";
Nature 435:43-57(2005).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AC116984; AAO51416.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AAFI02000011; EAL70582.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AAFI02000009; EAL70863.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq XP_644508.1; -.
XP_644742.1; -.
3D structure databases
ModBase Q556W1.
Organism-specific databases
dictyBase DDB0238432; ddo-1.
DDB0238431; ddo-2.
Ontologies
GO
GO:0005778; Cellular component: peroxisomal membrane (inferred from electronic annotation from UniProtKB-SubCell).
GO:0008445; Molecular function: D-aspartate oxidase activity (inferred from electronic annotation from EC).
QuickGo view.
Family and domain databases
InterPro IPR006181; D-amino_acid_oxidase_CS.
IPR006076; FAD-dep_OxRdtase.
IPR016040; NAD(P)-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.720; NAD(P)-bd; 1.
Pfam PF01266; DAO; 1.
Pfam graphical view of domain structure.
PROSITE PS00677; DAO; 1.
BLOCKS Q556W1.
Genome annotation databases
GeneID 3395591; -.
3395936; -.
KEGG ddi:DDBDRAFT_0203041; -.
ddi:DDBDRAFT_0217305; -.
Other
ProtoNet Q556W1.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; FAD; Flavoprotein; Glycoprotein; Membrane; Oxidoreductase; Peroxisome; Signal-anchor; Transmembrane.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   346  346     D-aspartate oxidase. PRO_0000328215
TOPO_DOM   1    12  12     Cytoplasmic (Potential). 
TRANSMEM   13    32  20     Signal-anchor for type II membrane protein (Potential). 
TOPO_DOM   33   346  314     Peroxisomal (Potential). 
NP_BIND   16    30  15     FAD (Potential). 
MOTIF   344   346  3     Microbody targeting signal (Potential). 
COMPBIAS   2    11  10     Poly-Asn. 
ACT_SITE   227   227        By similarity. 
ACT_SITE   306   306        By similarity. 
CARBOHYD   51    51        N-linked (GlcNAc...) (Potential). 
CARBOHYD   185   185        N-linked (GlcNAc...) (Potential). 
CARBOHYD   212   212        N-linked (GlcNAc...) (Potential). 
Sequence information
Length: 346 AA [This is the length of the unprocessed precursor] Molecular weight: 39166 Da [This is the MW of the unprocessed precursor] CRC64: 11D20516EFC86E45 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MNQNKNNNNK NPKINLLIIG CGCIGLSTGI IALKSGNYKS VSIWAKDLPP NTTSNKAAAL 

        70         80         90        100        110        120 
WYPFLCNPLD LVGKWSAETM QYYKDHIIND PKSGTITKKV NEIFRRPHPE DPEWKPYIKS 

       130        140        150        160        170        180 
FRRARKDELP DGYVDGYAID DGFVMDTDMY MDYLVDQFKS LGGIIEQRHL VDIREAFVDH 

       190        200        210        220        230        240 
DVVVNCTGLG SRELFNDRTI YPGRGQIIVI KNSTDRSIMD EEDHIAYVIP RLTNTVLGGT 

       250        260        270        280        290        300 
NQEHDYNTNP TKKDTEEILK RVAMISPRFA KNRIEIQGVK VGLRPARHEI RLENEFFEGG 

       310        320        330        340 
SKLVVHNYGH GGSGFTVSWG CAIEAIKLVD QGLPKLLHFN KLISKL 

Q556W1 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
 Hosted by kr flag YPRC Korea Mirror sites: Australia  Brazil  Canada  China  Switzerland
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!