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UniProtKB/Swiss-Prot entry Q4P5U1


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name JHD1_USTMA
Primary accession number Q4P5U1
Secondary accession numbers None
Integrated into Swiss-Prot on March 7, 2006
Sequence was last modified on July 19, 2005 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 27)
Name and origin of the protein
Protein name JmjC domain-containing histone demethylation protein 1
Synonyms EC 1.14.11.27
[Histone-H3]-lysine-36 demethylase 1
Gene name
Name: JHD1
ORFNames: UM04522
From
Ustilago maydis (Smut fungus) [TaxID: 5270] 
Taxonomy Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago.
Protein existence 3: Inferred from homology;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=521;
DOI=10.1038/nature05248; PubMed=17080091 [NCBI, ExPASy, EBI, Israel, Japan]
Kaemper J., Kahmann R., Boelker M., Ma L.-J., Brefort T., Saville B.J., Banuett F., Kronstad J.W., Gold S.E., Mueller O., Perlin M.H., Woesten H.A.B., de Vries R., Ruiz-Herrera J., Reynaga-Pena C.G., Snetselaar K., McCann M., Perez-Martin J., Feldbruegge M., Basse C.W., Steinberg G., Ibeas J.I., Holloman W., Guzman P., Farman M.L., Stajich J.E., Sentandreu R., Gonzalez-Prieto J.M., Kennell J.C., Molina L., Schirawski J., Mendoza-Mendoza A., Greilinger D., Muench K., Roessel N., Scherer M., Vranes M., Ladendorf O., Vincon V., Fuchs U., Sandrock B., Meng S., Ho E.C.H., Cahill M.J., Boyce K.J., Klose J., Klosterman S.J., Deelstra H.J., Ortiz-Castellanos L., Li W., Sanchez-Alonso P., Schreier P.H., Haeuser-Hahn I., Vaupel M., Koopmann E., Friedrich G., Voss H., Schlueter T., Margolis J., Platt D., Swimmer C., Gnirke A., Chen F., Vysotskaia V., Mannhaupt G., Gueldener U., Muensterkoetter M., Haase D., Oesterheld M., Mewes H.-W., Mauceli E.W., DeCaprio D., Wade C.M., Butler J., Young S.K., Jaffe D.B., Calvo S.E., Nusbaum C., Galagan J.E., Birren B.W.;
"Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis.";
Nature 444:97-101(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AACP01000161; EAK85404.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq XP_760669.1; -.
3D structure databases
ModBase Q4P5U1.
Family and domain databases
InterPro IPR013129; TF_JmjC.
IPR003347; TF_JmjC_AAH.
IPR001965; Znf_PHD.
IPR013083; Znf_RING/FYVE/PHD.
Graphical view of domain structure.
Gene3D G3DSA:3.30.40.10; Znf_RING/FYVE/PHD; 1.
Pfam PF02373; JmjC; 1.
PF00628; PHD; 1.
Pfam graphical view of domain structure.
SMART SM00558; JmjC; 1.
SM00249; PHD; 1.
SMART graphical view of domain structure.
PROSITE PS51184; JMJC; 1.
PS01359; ZF_PHD_1; 1.
PS50016; ZF_PHD_2; FALSE_NEG.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q4P5U1.
Genome annotation databases
GeneID 3632625; -.
KEGG uma:UM04522.1; -.
Other
ProtoNet Q4P5U1.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Chromatin regulator; Complete proteome; Dioxygenase; Iron; Metal-binding; Nucleus; Oxidoreductase; Transcription; Transcription regulation; Zinc; Zinc-finger.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   669  669     JmjC domain-containing histone demethylation protein 1. PRO_0000226799
DOMAIN   332   494  163     JmjC. 
ZN_FING   65   126  62     PHD-type. 
METAL   390   390        Iron; catalytic (By similarity). 
METAL   392   392        Iron; catalytic (By similarity). 
METAL   462   462        Iron; catalytic (By similarity). 
BINDING   407   407        Substrate (By similarity). 
Sequence information
Length: 669 AA [This is the length of the unprocessed precursor] Molecular weight: 74838 Da [This is the MW of the unprocessed precursor] CRC64: D8C8BAB766646282 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MTAVAASSRV SDPLAASSSA HPRTLRSSPR KRTTSHDSSI SPSAAQSKQL PRRKKPRTEL 

        70         80         90        100        110        120 
VDESELDCAA CPAVGQPAPT PGKGAASDRE TWICCTHCKT WFHCICIGLE NPDDFSKWYC 

       130        140        150        160        170        180 
QPCITRSEQT FESGTSSSHP PFANVVRPPR RKSERAKLQI DYAAIQEGIP ADPLGRWKNL 

       190        200        210        220        230        240 
LNAYEFEPDQ FRRMQGHEWT FDWLLHDESA LKQPVLVPAP PDRSSQAPHV QAKAEDVAAS 

       250        260        270        280        290        300 
PVPRPKPARA KKQATHRLVP CHTSIPGMVV PPPEMSIFDV ADIIGHDTPV EVIDVASQSS 

       310        320        330        340        350        360 
SKASWTISEW AEYFNTPKEK KKKTLNVISL EVTGTPMQAY VEAPQLVRDL DWVTRDWPAE 

       370        380        390        400        410        420 
RRDASCSENS WPKVQRYVLM GVEGAYSDWH IDFAGSSVYY HVIWGQKTFL FAPPTARNLA 

       430        440        450        460        470        480 
AYKAWCSSTR QDFDWLGDHL HSLTRVDIGP GETMLIPSGW LHCVYTPKNT LVVGGNFLTD 

       490        500        510        520        530        540 
WNVATQWKLV EIEEATKVPR KFRFPHLKRL SWFVAKGWND RLEPLAEFET LTKEEDQVLE 

       550        560        570        580        590        600 
ESAQVSAQVD VGSLTEVVPP LKVLNNIELV LQSLSDDLEL IQDPYVAESG DERKVKQQKA 

       610        620        630        640        650        660 
AREAIPTHHV GNIQKAEAML ASLRQRVDRA KSLADAVQSE RVCLTWEATR AKKAKAANGS 


AIKSRKARR 

Q4P5U1 in FASTA format

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