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UniProtKB/TrEMBL entry Q460M5

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name Q460M5_RAT
Primary accession number Q460M5
Secondary accession numbers None
Integrated into TrEMBL on September 13, 2005
Sequence was last modified on September 13, 2005 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 32)
Name and origin of the protein
Protein name SALM1
Synonyms None
Gene name
Name: Lrfn2
From
Rattus norvegicus (Rat) [TaxID: 10116] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
Protein existence 1: Evidence at protein level;
References
[1]
 NUCLEOTIDE SEQUENCE.
STRAIN=Sprague-Dawley;
DOI=10.1523/JNEUROSCI.3799-05.2006; PubMed=16495444 [NCBI, ExPASy, EBI, Israel, Japan]
Wang C.Y., Chang K., Petralia R.S., Wang Y.X., Seabold G.K., Wenthold R.J.;
"A novel family of adhesion-like molecules that interacts with the NMDA receptor.";
J. Neurosci. 26:2174-2183(2006).
[2]
 NUCLEOTIDE SEQUENCE.
STRAIN=Sprague-Dawley;
Wang C.-Y., Wenthold R.J.;
"Synaptic Adhesion-Like Molecules, a Novel Family of Proteins Interacting with NMDA Receptor and MAGUKs.";
Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
DQ070869; AAZ20638.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
UniGene Rn.47365
3D structure databases
ModBase Q460M5.
Protein-protein interaction databases
IntAct Q460M5; -.
Organism-specific databases
RGD 1311831; Lrfn2.
Gene expression databases
ArrayExpress Q460M5; -.
Ontologies
GO
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
QuickGo view.
Family and domain databases
InterPro IPR008957; Fibronectin_typ-III-like_fold.
IPR003961; FN_III.
IPR007110; Ig-like.
IPR013783; Ig-like_fold.
IPR013098; Ig_I-set.
IPR003598; Ig_sub2.
IPR001611; LRR.
IPR000483; LRR_C.
IPR000372; LRR_cys_N.
IPR003591; LRR_sub-typ.
Graphical view of domain structure.
Gene3D G3DSA:2.60.40.30; FN_III-like; 1.
G3DSA:2.60.40.10; Ig-like_fold; 1.
Pfam PF00041; fn3; 1.
PF07679; I-set; 1.
PF00560; LRR_1; 6.
Pfam graphical view of domain structure.
PRINTS PR00019; LEURICHRPT.
SMART SM00060; FN3; 1.
SM00408; IGc2; 1.
SM00369; LRR_TYP; 3.
SM00082; LRRCT; 1.
SM00013; LRRNT; 1.
SMART graphical view of domain structure.
PROSITE PS50853; FN3; 1.
PS50835; IG_LIKE; 1.
PROSITE graphical view of domain structure (profiles).
Genome annotation databases
Ensembl ENSRNOG00000011803; Rattus norvegicus. [Contig view]
Phylogenomic databases
HOVERGEN Q460M5; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Immunoglobulin domain; Leucine-rich repeat; Repeat.
Features
None
Sequence information
Length: 788 AA Molecular weight: 84917 Da CRC64: 1C0837EAFF3F36EC [This is a checksum on the sequence] 
        10         20         30         40         50         60 
METLLGGLLA FGMAFAVVDA CPKYCVCQNL SESLGTLCPS KGLLFVPPDI DRRTVELRLG 

        70         80         90        100        110        120 
GNFIIHIGRQ DFANMTGLVD LTLSRNTISH IQPFSFLDLE SLRSLHLDSN RLPSLGEDTL 

       130        140        150        160        170        180 
RGLVNLQHLI VNNNQLGGIA DDAFEDFLLT LEDLDLSYNN LHGLPWDSVR RMVNLHQLSL 

       190        200        210        220        230        240 
DHNLLDHIAE GTFADLQKLA RLDLTSNRLQ KLPPDPIFAR SQASLLTATP FAPPLSFSFG 

       250        260        270        280        290        300 
GNPLHCNCEL LWLRRLERDD DLKTCGSPGG LKGRYFWHIR EEEFVCEPPL ITQHTHKLLV 

       310        320        330        340        350        360 
LEGQAATLKC KAIGDPSPLI HWVAPDDRLV GNSSRTAVYD NGTLDILITT SQDSGPFTCI 

       370        380        390        400        410        420 
AANAAGEATA TVEVSIVQLP HLSNSTSRMA PPKSRLSDIT GSSKTSRGGG GSGAGEPPKS 

       430        440        450        460        470        480 
TPERAVLVSD VTTTSALVKW SVSKSAPRVK MYQLQYNCSD DEVLIYRMIP ASNKAFVVNN 

       490        500        510        520        530        540 
LVSGTGYDLC VLAMWDDTAT TLTATNIVGC AQFFTKADYP QCQSMHSQIL GGTMILVIGG 

       550        560        570        580        590        600 
IIVATLLVFI VILMVRYKVC NHDAPGKMAA ATVSNVYSQT NGAQPPPLGG MPVGQLPQAP 

       610        620        630        640        650        660 
PKVVVRNELM DFSTSLARAC DSSSSSSLGS GEAAGLSRGP WRLPPPAPRP KPSLDRLMGA 

       670        680        690        700        710        720 
FASLDLKSQR KEELLDSRTP AGRGAGTSAR GHHSDREPLL GPPATRARSL LPLPLEGKAK 

       730        740        750        760        770        780 
RSHSFDMGDF AAAAAAAPGG YSPPRRVSNI WTKRSLSVNG MLLPFEENDL VGARGTFGSS 


EWVMESTV
Q460M5 in FASTA format

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