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UniProtKB/Swiss-Prot entry Q42843


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name HEM11_HORVU
Primary accession number Q42843
Secondary accession number Q42844
Integrated into Swiss-Prot on November 1, 1997
Sequence was last modified on November 1, 1997 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 62)
Name and origin of the protein
Protein name Glutamyl-tRNA reductase 1, chloroplastic [Precursor]
Synonyms GluTR
EC 1.2.1.70
Gene name
Name: HEMA1
From
Hordeum vulgare (Barley) [TaxID: 4513] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Pooideae; Triticeae; Hordeum.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Klages;
PubMed=8696365 [NCBI, ExPASy, EBI, Israel, Japan]
Bougri O., Grimm B.;
"Members of a low-copy number gene family encoding glutamyl-tRNA reductase are differentially expressed in barley.";
Plant J. 9:867-878(1996).
[2]
PROTEIN SEQUENCE OF 44-65, AND CHARACTERIZATION.
PubMed=7957167 [NCBI, ExPASy, EBI, Israel, Japan]
Pontoppidan B., Kannangara C.G.;
"Purification and partial characterisation of barley glutamyl-tRNA(Glu) reductase, the enzyme that directs glutamate to chlorophyll biosynthesis.";
Eur. J. Biochem. 225:529-537(1994).
[3]
FUNCTION, CHARACTERIZATION, HEME BINDING, AND SUBUNIT.
DOI=10.1073/pnas.93.17.9287; PubMed=8799193 [NCBI, ExPASy, EBI, Israel, Japan]
Vothknecht U.C., Kannangara C.G., von Wettstein D.;
"Expression of catalytically active barley glutamyl tRNAGlu reductase in Escherichia coli as a fusion protein with glutathione S-transferase.";
Proc. Natl. Acad. Sci. U.S.A. 93:9287-9291(1996).
[4]
3D-STRUCTURE MODELING OF 76-460.
DOI=10.1002/(SICI)1097-0134(19991115)37:3<485::AID-PROT15>3.0.CO;2-G; PubMed=10591107 [NCBI, ExPASy, EBI, Israel, Japan]
Brody S.S., Gough S.P., Kannangara C.G.;
"Predicted structure and fold recognition for the glutamyl tRNA reductase family of proteins.";
Proteins 37:485-493(1999).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X92403; CAA63140.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
X86101; CAA60054.1; ALT_INIT; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR T05732; T05732.
3D structure databases
PDB
1B29; Model; -; A=76-460.[ExPASy / RCSB / EBI]
1B61; Model; -; A=76-460.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1B29; -.
1B61; -.
ModBase Q42843.
Organism-specific databases
Gramene Q42843; -.
Family and domain databases
InterPro IPR000343; 4pyrrol_synth_GluRdtase.
IPR015896; 4pyrrol_synth_GluRdtase_C.
IPR015895; 4pyrrol_synth_GluRdtase_N.
IPR016040; NAD(P)-bd.
IPR006151; Shikm_DHase/Glu-tRNA_Rdtase.
Graphical view of domain structure.
Gene3D G3DSA:3.40.50.720; NAD(P)-bd; 1.
Pfam PF00745; GlutR_dimer; 1.
PF05201; GlutR_N; 1.
PF01488; Shikimate_DH; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF000445; 4pyrrol_synth_GluRdtase; 1.
TIGRFAMs TIGR01035; hemA; 1.
PROSITE PS00747; GLUTR; 1.
BLOCKS Q42843.
Other
LinkHub Q42843; -.
ProtoNet Q42843.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Chlorophyll biosynthesis; Chloroplast; Direct protein sequencing; NADP; Oxidoreductase; Plastid; Porphyrin biosynthesis; Transit peptide.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
TRANSIT   1    43  43     Chloroplast. 
CHAIN   44   527  484     Glutamyl-tRNA reductase 1, chloroplastic. PRO_0000013311
NP_BIND   266   271  6     NADP (By similarity). 
REGION   124   127  4     Substrate binding (By similarity). 
REGION   189   191  3     Substrate binding (By similarity). 
COMPBIAS   286   289  4     Poly-Val. 
ACT_SITE   125   125        Nucleophile (By similarity). 
BINDING   184   184        Substrate (By similarity). 
BINDING   195   195        Substrate (By similarity). 
SITE   174   174  1     Important for activity (By similarity). 
STRAND   79    81  3      
STRAND   96    99  4      
HELIX   104   125  22      
STRAND   133   137  5      
TURN   150   152  3      
HELIX   155   159  5      
HELIX   170   182  13      
HELIX   193   197  5      
HELIX   209   213  5      
STRAND   215   222  8      
HELIX   225   230  6      
HELIX   233   251  19      
STRAND   262   265  4      
HELIX   269   281  13      
STRAND   285   288  4      
HELIX   293   302  10      
HELIX   313   315  3      
TURN   316   318  3      
HELIX   319   321  3      
STRAND   324   327  4      
STRAND   334   336  3      
HELIX   347   350  4      
STRAND   356   358  3      
STRAND   361   363  3      
STRAND   365   367  3      
HELIX   368   376  9      
STRAND   380   383  4      
HELIX   386   389  4      
STRAND   392   397  6      
HELIX   398   404  7      
STRAND   406   410  5      
HELIX   413   421  9      
HELIX   423   436  14      
HELIX   443   457  15      
Sequence information
Length: 527 AA [This is the length of the unprocessed precursor] Molecular weight: 57653 Da [This is the MW of the unprocessed precursor] CRC64: D329E56458BE1165 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MAGATSATAA AGAFAAAKAR GPAAACPWLV AAGGRRRSGV VRCDAGGDAQ AASKAASITA 

        70         80         90        100        110        120 
LEQFKISADR YMKEKSSIAV IGLSVHTAPV EMREKLAVAE ELWPRAISEL TSLNHIEEAA 

       130        140        150        160        170        180 
VLSTCNRMEI YVVALSWNRG IREVVDWMSK KSGIPASELR EHLFMLRDSD ATRHLFEVSA 

       190        200        210        220        230        240 
GLDSLVLGEG QILAQVKQVV RNGQNSGGLG KNIDRMFKDA ITAGKRVRCE TNISAGAVSV 

       250        260        270        280        290        300 
SSAAVELAMM KLPKSECLSA RMLLIGAGKM GKLVVKHLIA KGCKKVVVVN RSVERVDAIR 

       310        320        330        340        350        360 
EEMKDIEIVY RPLTEMYEAA ADADVVFTST ASESLLFTKE HAEVLPPISL AMGGVRLFVD 

       370        380        390        400        410        420 
ISVPRNVGAC LSEVEHARVY NVDDLKEVVE ANKEDRVRKA MEAQTIITQE LKRFEAWRDS 

       430        440        450        460        470        480 
LETVPTIKKL RSYADRIRAS ELEKCLQKIG EDNLNKKMRR SIEELSTGIV NKLLHGPLQH 

       490        500        510        520 
LRCDGSDSRT LDETLENMHA LNRMFSLDTE KAVLEQKIKA KVEKTQS 

Q42843 in FASTA format

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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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