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UniProtKB/Swiss-Prot entry Q2R8Z5


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name ADH1_ORYSJ
Primary accession number Q2R8Z5
Secondary accession numbers P20306 Q2R8Z6 Q2R8Z7 Q9LLP9
Integrated into Swiss-Prot on June 12, 2007
Sequence was last modified on July 11, 2006 (Sequence version 2)
Annotations were last modified on    September 2, 2008 (Entry version 32)
Name and origin of the protein
Protein name Alcohol dehydrogenase 1
Synonym EC 1.1.1.1
Gene name
Name: ADH1
Synonyms: DUPR11.3
OrderedLocusNames: Os11g0210300, LOC_Os11g10480
ORFNames: OsJ_032001
From
Oryza sativa subsp. japonica (Rice) [TaxID: 39947] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1105/tpc.12.3.381; PubMed=10715324 [NCBI, ExPASy, EBI, Israel, Japan]
Tarchini R., Biddle P., Wineland R., Tingey S., Rafalski A.;
"The complete sequence of 340 kb of DNA around the rice Adh1-Adh2 region reveals interrupted colinearity with maize chromosome 4.";
Plant Cell 12:381-391(2000).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
STRAIN=cv. Ilpoombyeo;
TISSUE=Seed;
Yoon U.H., Kim Y.H.;
"Molecular cloning of alcohol dehydrogenase 1 genes in rice seeds.";
Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1186/1741-7007-3-20; PubMed=16188032 [NCBI, ExPASy, EBI, Israel, Japan]
The rice chromosomes 11 and 12 sequencing consortia;
"The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.";
BMC Biol. 3:20-20(2005).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1038/nature03895; PubMed=16100779 [NCBI, ExPASy, EBI, Israel, Japan]
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[5]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
DOI=10.1101/gr.5509507; PubMed=17210932 [NCBI, ExPASy, EBI, Israel, Japan]
The rice annotation project (RAP);
"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.";
Genome Res. 17:175-183(2007).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1371/journal.pbio.0030038; PubMed=15685292 [NCBI, ExPASy, EBI, Israel, Japan]
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Nipponbare;
DOI=10.1126/science.1081288; PubMed=12869764 [NCBI, ExPASy, EBI, Israel, Japan]
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.";
Science 301:376-379(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AF172282; AAF34414.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
EF122490; ABL74577.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
DP000010; ABA92029.2; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
DP000010; ABA92030.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
DP000010; ABA92031.2; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP008217; BAF27847.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
CM000148; EAZ17792.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK069330; -; NOT_ANNOTATED_CDS; mRNA.[EMBL / GenBank / DDBJ]
RefSeq NP_001067484.1; -.
UniGene Os.21601
3D structure databases
HSSP P11766; 1M6H. [HSSP ENTRY / PDB]
ModBase Q2R8Z5.
Organism-specific databases
Gramene P20306; -.
Family and domain databases
InterPro IPR013154; AlcDHase_GroES-like.
IPR002085; AlcDHase_SF_Zn.
IPR013149; AlcDHase_Zn-bd.
IPR002328; AlcDHase_Zn_CS.
Graphical view of domain structure.
PANTHER PTHR11695; ADH_Sf_Zn; 1.
Pfam PF08240; ADH_N; 1.
PF00107; ADH_zinc_N; 1.
Pfam graphical view of domain structure.
PROSITE PS00059; ADH_ZINC; 1.
BLOCKS Q2R8Z5.
Genome annotation databases
GeneID 4350053; -.
KEGG osa:4350053; -.
Other
ProtoNet Q2R8Z5.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Alternative splicing; Cytoplasm; Metal-binding; NAD; Oxidoreductase; Zinc.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   379  379     Alcohol dehydrogenase 1. PRO_0000160707
METAL   47    47        Zinc 1; catalytic (By similarity). 
METAL   69    69        Zinc 1; catalytic (By similarity). 
METAL   100   100        Zinc 2 (By similarity). 
METAL   102   102        Zinc 2 (By similarity). 
METAL   105   105        Zinc 2 (By similarity). 
METAL   113   113        Zinc 2 (By similarity). 
METAL   177   177        Zinc 1; catalytic (By similarity). 
Sequence information
Length: 379 AA [This is the length of the unprocessed precursor] Molecular weight: 40984 Da [This is the MW of the unprocessed precursor] CRC64: 1281E87F3DB30545 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MATAGKVIKC KAAVAWEAAK PLVIEEVEVA PPQAMEVRVK ILFTSLCHTD VYFWEAKGQT 

        70         80         90        100        110        120 
PVFPRIFGHE AGGIVESVGE GVTDLAPGDH VLPVFTGECK ECAHCKSAES NMCDLLRINT 

       130        140        150        160        170        180 
DRGVMIGDGK SRFSINGKPI YHFVGTSTFS EYTVMHVGCV AKINPAAPLD KVCVLSCGIS 

       190        200        210        220        230        240 
TGLGATINVA KPPKGSTVAI FGLGAVGLAA AEGARIAGAS RIIGIDLNAN RFEEARKFGC 

       250        260        270        280        290        300 
TEFVNPKDHD KPVQQVLAEM TNGGVDRSVE CTGNINAMIQ AFECVHDGWG VAVLVGVPHK 

       310        320        330        340        350        360 
DAEFKTHPMN FLNERTLKGT FFGNYKPRTD LPNVVELYMK KELEVEKFIT HSVPFSEINT 

       370 
AFDLMHKGEG IRCIIRMEN 

Q2R8Z5 in FASTA format

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