ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!
Search for

UniProtKB/Swiss-Prot entry Q1PDH6


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

Note: most headings are clickable, even if they don't appear as links. They link to the user manual or other documents.
Entry information
Entry name LAC16_ARATH
Primary accession number Q1PDH6
Secondary accession numbers A0MFQ5 Q3E893
Integrated into Swiss-Prot on April 3, 2007
Sequence was last modified on April 3, 2007 (Sequence version 2)
Annotations were last modified on    September 2, 2008 (Entry version 17)
Name and origin of the protein
Protein name Laccase-16 [Precursor]
Synonyms EC 1.10.3.2
Benzenediol:oxygen oxidoreductase 16
Urishiol oxidase 16
Diphenol oxidase 16
Gene name
Name: LAC16
OrderedLocusNames: At5g58910
ORFNames: K19M22.11
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/35048507; PubMed=11130714 [NCBI, ExPASy, EBI, Israel, Japan]
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
Nature 408:823-826(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 37-566.
STRAIN=cv. Columbia;
DOI=10.1111/j.1467-7652.2006.00183.x; PubMed=17147637 [NCBI, ExPASy, EBI, Israel, Japan]
Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
"Simultaneous high-throughput recombinational cloning of open reading frames in closed and open configurations.";
Plant Biotechnol. J. 4:317-324(2006).
[3]
TISSUE SPECIFICITY.
DOI=10.1007/s00425-004-1472-6; PubMed=15940465 [NCBI, ExPASy, EBI, Israel, Japan]
McCaig B.C., Meagher R.B., Dean J.F.D.;
"Gene structure and molecular analysis of the laccase-like multicopper oxidase (LMCO) gene family in Arabidopsis thaliana.";
Planta 221:619-636(2005).
[4]
TISSUE SPECIFICITY.
DOI=10.1093/jxb/erl022; PubMed=16804053 [NCBI, ExPASy, EBI, Israel, Japan]
Cai X., Davis E.J., Ballif J., Liang M., Bushman E., Haroldsen V., Torabinejad J., Wu Y.;
"Mutant identification and characterization of the laccase gene family in Arabidopsis.";
J. Exp. Bot. 57:2563-2569(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AB016885; -; NOT_ANNOTATED_CDS; Genomic_DNA.[EMBL / GenBank / DDBJ]
DQ447092; ABE66261.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
DQ653381; ABK28766.1; ALT_SEQ; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
3D structure databases
ModBase Q1PDH6.
Organism-specific databases
TAIR At5g58910; -.
Family and domain databases
InterPro IPR001117; Cu-oxidase.
IPR011706; Cu-oxidase_2.
IPR011707; Cu-oxidase_3.
IPR002355; Cu_oxidase_Cu_BS.
IPR008972; Cupredoxin.
IPR017761; Laccase.
Graphical view of domain structure.
Gene3D G3DSA:2.60.40.420; Cupredoxin; 3.
Pfam PF00394; Cu-oxidase; 1.
PF07731; Cu-oxidase_2; 1.
PF07732; Cu-oxidase_3; 1.
Pfam graphical view of domain structure.
PROSITE PS00079; MULTICOPPER_OXIDASE1; 1.
PS00080; MULTICOPPER_OXIDASE2; 1.
BLOCKS Q1PDH6.
Genome annotation databases
GenomeReviews BA000015_GR; AT5G58910.
Other
ProtoNet Q1PDH6.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Copper; Glycoprotein; Lignin degradation; Metal-binding; Oxidoreductase; Repeat; Signal.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    27  27     Potential. 
CHAIN   28   566  539     Laccase-16. PRO_0000283644
DOMAIN   37   150  114     Plastocyanin-like 1. 
DOMAIN   160   312  153     Plastocyanin-like 2. 
DOMAIN   414   550  137     Plastocyanin-like 3. 
METAL   84    84        Copper 1; type 2 (By similarity). 
METAL   86    86        Copper 2; type 3 (By similarity). 
METAL   129   129        Copper 2; type 3 (By similarity). 
METAL   131   131        Copper 3; type 3 (By similarity). 
METAL   467   467        Copper 4; type 1 (By similarity). 
METAL   470   470        Copper 1; type 2 (By similarity). 
METAL   472   472        Copper 3; type 3 (By similarity). 
METAL   529   529        Copper 3; type 3 (By similarity). 
METAL   530   530        Copper 4; type 1 (By similarity). 
METAL   531   531        Copper 2; type 3 (By similarity). 
METAL   535   535        Copper 4; type 1 (By similarity). 
CARBOHYD   39    39        N-linked (GlcNAc...) (Potential). 
CARBOHYD   80    80        N-linked (GlcNAc...) (Potential). 
CARBOHYD   116   116        N-linked (GlcNAc...) (Potential). 
CARBOHYD   300   300        N-linked (GlcNAc...) (Potential). 
CARBOHYD   331   331        N-linked (GlcNAc...) (Potential). 
CARBOHYD   389   389        N-linked (GlcNAc...) (Potential). 
CARBOHYD   406   406        N-linked (GlcNAc...) (Potential). 
CARBOHYD   449   449        N-linked (GlcNAc...) (Potential). 
Sequence information
Length: 566 AA [This is the length of the unprocessed precursor] Molecular weight: 62373 Da [This is the MW of the unprocessed precursor] CRC64: 4BCFEEC24628B5FB [This is a checksum on the sequence]
        10         20         30         40         50         60 
MEIPRRFCIC VLTFFVFVLL SPTTVHSIIR HYKFNVMTNT TKLCSSKPIV TVNGQFPGPT 

        70         80         90        100        110        120 
IVAREGDTIL IKVVNHVKYN VSIHWHGIRQ LRTGWADGPA YITQCPIQPG QNYLHNFTLT 

       130        140        150        160        170        180 
GQRGTLWWHA HILWLRATVH GAIVILPKLG VPYPFPKPYK EKTIVLSEWW KSDVEELINE 

       190        200        210        220        230        240 
ASRIGTAPSA SDAHTINGHS GSISNCPSQS SYGLPVRAGK TYMLRIINAA LNEELFFKIA 

       250        260        270        280        290        300 
GHVLTVVEVD AVYTKPYKTD TVFIAPGQTT NVLLTANANA GSNYMVAATT FTDAHIPYDN 

       310        320        330        340        350        360 
VTATATLHYI GHTSTVSTSK KTVLASLPPQ NATWVATKFT RSLRSLNSLE YPARVPTTVE 

       370        380        390        400        410        420 
HSLFFTVGLG ANPCQSCNNG VRLVAGINNV TFTMPKTALL QAHFFNISGV FTDDFPAKPS 

       430        440        450        460        470        480 
NPYDYTAPVK LGVNAATMKG TKLYRLPYNA TVQIVLQNTA MILSDNHPFH LHGFNFFEVG 

       490        500        510        520        530        540 
RGLGNFNPEK DPKAFNLVDP VERNTVGVPA GGWTAIRFIA DNPGVWFMHC HLELHTTWGL 

       550        560 
KMAFVVDNGH GPDQSLLPPP ADLPKC 

Q1PDH6 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
Report form for errors/updates in this UniProtKB/Swiss-Prot entry

BLAST logo BLAST submission on ExPASy/SIB
or at NCBI (USA)
Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
PROSITE logo ScanProsite, MotifScan SWISS-MODEL Submit a homology modeling request to SWISS-MODEL
NPSA logo NPSA Sequence analysis tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Swiss-Prot
 Hosted by kr flag YPRC Korea Mirror sites: Australia  Brazil  Canada  China  Switzerland
Notice: This page will be replaced with www.uniprot.org. Please send us your feedback!