[1]
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PRELIMINARY NUCLEOTIDE SEQUENCE [MRNA], PROTEIN SEQUENCE OF 19-41; 491-510 AND 555-565, AND FUNCTION.
TISSUE=T-cell lymphoma;
PubMed=7519613 [NCBI, ExPASy, EBI, Israel, Japan]
Kao P.N.,
Chen L.,
Brock G.,
Ng J.,
Kenny J.,
Smith A.J.,
Corthesy B.;
"Cloning and expression of cyclosporin A- and FK506-sensitive nuclear factor of activated T-cells: NF45 and NF90.";
J. Biol. Chem. 269:20691-20699(1994).
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[2]
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NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), AND PROTEIN SEQUENCE OF N-TERMINUS.
TISSUE=Cervix carcinoma;
DOI=10.1074/jbc.274.29.20432; PubMed=10400669 [NCBI, ExPASy, EBI, Israel, Japan]
Patel R.C.,
Vestal D.J.,
Xu Z.,
Bandyopadhyay S.,
Guo W.,
Erme S.M.,
Williams B.R.,
Sen G.C.;
"DRBP76, a double-stranded RNA-binding nuclear protein, is phosphorylated by the interferon-induced protein kinase, PKR.";
J. Biol. Chem. 274:20432-20437(1999).
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[3]
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NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3), AND CHARACTERIZATION.
TISSUE=Liver;
DOI=10.1006/mgme.1999.2934; PubMed=10607473 [NCBI, ExPASy, EBI, Israel, Japan]
Xu Y.-H.,
Grabowski G.A.;
"Molecular cloning and characterization of a translational inhibitory protein that binds to coding sequences of human acid beta-glucosidase and other mRNAs.";
Mol. Genet. Metab. 68:441-454(1999).
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[4]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORMS 1; 2; 4 AND 5), AND ALTERNATIVE SPLICING.
TISSUE=Melanoma;
DOI=10.1016/S0378-1119(00)00495-9; PubMed=11167023 [NCBI, ExPASy, EBI, Israel, Japan]
Duchange N.,
Pidoux J.,
Camus E.,
Sauvaget D.;
"Alternative splicing in the human interleukin enhancer binding factor 3 (ILF3) gene.";
Gene 261:345-353(2000).
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[5]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORMS 1 AND 2), AND CHARACTERIZATION.
DOI=10.1074/jbc.M104207200; PubMed=11438536 [NCBI, ExPASy, EBI, Israel, Japan]
Saunders L.R.,
Perkins D.J.,
Balachandran S.,
Michaels R.,
Ford R.,
Mayeda A.,
Barber G.N.;
"Characterization of two evolutionarily conserved, alternatively spliced nuclear phosphoproteins, NFAR-1 and -2, that function in mRNA processing and interact with the double-stranded RNA-dependent protein kinase, PKR.";
J. Biol. Chem. 276:32300-32312(2001).
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[6]
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NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORMS 1 AND 2), AND VARIANT HIS-50.
TISSUE=T-cell;
DOI=10.1006/geno.2000.6423; PubMed=11161820 [NCBI, ExPASy, EBI, Israel, Japan]
Saunders L.R.,
Jurecic V.,
Barber G.N.;
"The 90- and 110-kDa human NFAR proteins are translated from two differentially spliced mRNAs encoded on chromosome 19p13.";
Genomics 71:256-259(2001).
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[7]
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NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 6).
TISSUE=Duodenum, and Uterus;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
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[8]
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NUCLEOTIDE SEQUENCE [MRNA] OF 1-611.
TISSUE=Blood, and Cervix;
PubMed=8885239 [NCBI, ExPASy, EBI, Israel, Japan]
Matsumoto-Taniura N.,
Pirollet F.,
Monroe R.,
Gerace L.,
Westendorf J.M.;
"Identification of novel M phase phosphoproteins by expression cloning.";
Mol. Biol. Cell 7:1455-1469(1996).
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[9]
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PROTEIN SEQUENCE OF 1-10, FUNCTION, AND INTERACTION WITH G22P1; PRKDC AND XRCC5.
DOI=10.1074/jbc.273.4.2136; PubMed=9442054 [NCBI, ExPASy, EBI, Israel, Japan]
Ting N.S.Y.,
Kao P.N.,
Chan D.W.,
Lintott L.G.,
Lees-Miller S.P.;
"DNA-dependent protein kinase interacts with antigen receptor response element binding proteins NF90 and NF45.";
J. Biol. Chem. 273:2136-2145(1998).
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[10]
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NUCLEOTIDE SEQUENCE [MRNA] OF 188-894 (ISOFORMS 1; 2 AND 3).
MacArdle J.,
Cantarella G.M.,
Veyrune J.-L.,
Krasnoselskaya I.,
Kumar A.;
"Structure and functional characterization of hDRBF gene.";
Submitted (NOV-1999) to the EMBL/GenBank/DDBJ databases.
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[11]
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NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 587-894 (ISOFORM 1).
TISSUE=Brain;
Yu W.,
Sarginson J.,
Gibbs R.A.;
Submitted (JUN-1997) to the EMBL/GenBank/DDBJ databases.
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[12]
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INTERACTION WITH ILF2.
DOI=10.1074/jbc.274.49.34598; PubMed=10574923 [NCBI, ExPASy, EBI, Israel, Japan]
Satoh M.,
Shaheen V.M.,
Kao P.N.,
Okano T.,
Shaw M.,
Yoshida H.,
Richards H.B.,
Reeves W.H.;
"Autoantibodies define a family of proteins with conserved double-stranded RNA-binding domains as well as DNA binding activity.";
J. Biol. Chem. 274:34598-34604(1999).
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[13]
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INTERACTION WITH PRMT1.
DOI=10.1074/jbc.M000023200; PubMed=10749851 [NCBI, ExPASy, EBI, Israel, Japan]
Tang J.,
Kao P.N.,
Herschman H.R.;
"Protein-arginine methyltransferase I, the predominant protein-arginine methyltransferase in cells, interacts with and is regulated by interleukin enhancer-binding factor 3.";
J. Biol. Chem. 275:19866-19876(2000).
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[14]
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IDENTIFICATION IN A NUCLEAR EXPORT RECEPTOR COMPLEX WITH XPO5; RAN AND DOUBLE-STRANDED RNA, AND INTERACTION WITH XPO5.
DOI=10.1083/jcb.200110082; PubMed=11777942 [NCBI, ExPASy, EBI, Israel, Japan]
Brownawell A.M.,
Macara I.G.;
"Exportin-5, a novel karyopherin, mediates nuclear export of double-stranded RNA binding proteins.";
J. Cell Biol. 156:53-64(2002).
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[15]
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SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS], AND MASS SPECTROMETRY.
DOI=10.1091/mbc.E02-05-0271; PubMed=12429849 [NCBI, ExPASy, EBI, Israel, Japan]
Scherl A.,
Coute Y.,
Deon C.,
Calle A.,
Kindbeiter K.,
Sanchez J.-C.,
Greco A.,
Hochstrasser D.F.,
Diaz J.-J.;
"Functional proteomic analysis of human nucleolus.";
Mol. Biol. Cell 13:4100-4109(2002).
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[16]
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INTERACTION WITH ILF2.
DOI=10.1128/MCB.22.1.343-356.2002; PubMed=11739746 [NCBI, ExPASy, EBI, Israel, Japan]
Reichman T.W.,
Muniz L.C.,
Mathews M.B.;
"The RNA binding protein nuclear factor 90 functions as both a positive and negative regulator of gene expression in mammalian cells.";
Mol. Cell. Biol. 22:343-356(2002).
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[17]
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IDENTIFICATION IN A NUCLEAR EXPORT RECEPTOR COMPLEX WITH XPO5; RAN AND VA1 RNA.
DOI=10.1074/jbc.M306808200; PubMed=14570900 [NCBI, ExPASy, EBI, Israel, Japan]
Gwizdek C.,
Ossareh-Nazari B.,
Brownawell A.M.,
Evers S.,
Macara I.G.,
Dargemont C.;
"Minihelix-containing RNAs mediate exportin-5-dependent nuclear export of the double-stranded RNA-binding protein ILF3.";
J. Biol. Chem. 279:884-891(2004).
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[18]
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IDENTIFICATION IN A NUCLEAR EXPORT RECEPTOR COMPLEX WITH XPO5; RAN; ZNF346 AND DOUBLE-STRANDED RNA, AND INTERACTION WITH XPO5 AND ZNF346.
DOI=10.1128/MCB.24.15.6608-6619.2004; PubMed=15254228 [NCBI, ExPASy, EBI, Israel, Japan]
Chen T.,
Brownawell A.M.,
Macara I.G.;
"Nucleocytoplasmic shuttling of JAZ, a new cargo protein for exportin-5.";
Mol. Cell. Biol. 24:6608-6619(2004).
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[19]
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METHYLATION [LARGE SCALE ANALYSIS] AT ARG-609, AND MASS SPECTROMETRY.
DOI=10.1038/nmeth715; PubMed=15782174 [NCBI, ExPASy, EBI, Israel, Japan]
Ong S.E.,
Mittler G.,
Mann M.;
"Identifying and quantifying in vivo methylation sites by heavy methyl SILAC.";
Nat. Methods 1:119-126(2004).
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[20]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-62 AND THR-592, AND MASS SPECTROMETRY.
TISSUE=Epithelium;
DOI=10.1073/pnas.0404720101; PubMed=15302935 [NCBI, ExPASy, EBI, Israel, Japan]
Beausoleil S.A.,
Jedrychowski M.,
Schwartz D.,
Elias J.E.,
Villen J.,
Li J.,
Cohn M.A.,
Cantley L.C.,
Gygi S.P.;
"Large-scale characterization of HeLa cell nuclear phosphoproteins.";
Proc. Natl. Acad. Sci. U.S.A. 101:12130-12135(2004).
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[21]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-382, AND MASS SPECTROMETRY.
TISSUE=T-cell;
DOI=10.1038/nmeth776; PubMed=16094384 [NCBI, ExPASy, EBI, Israel, Japan]
Tao W.A.,
Wollscheid B.,
O'Brien R.,
Eng J.K.,
Li X.-J.,
Bodenmiller B.,
Watts J.D.,
Hood L.,
Aebersold R.;
"Quantitative phosphoproteome analysis using a dendrimer conjugation chemistry and tandem mass spectrometry.";
Nat. Methods 2:591-598(2005).
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[22]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-190; SER-382; SER-482 AND THR-592, AND MASS SPECTROMETRY.
TISSUE=Epithelium;
DOI=10.1016/j.cell.2006.09.026; PubMed=17081983 [NCBI, ExPASy, EBI, Israel, Japan]
Olsen J.V.,
Blagoev B.,
Gnad F.,
Macek B.,
Kumar C.,
Mortensen P.,
Mann M.;
"Global, in vivo, and site-specific phosphorylation dynamics in signaling networks.";
Cell 127:635-648(2006).
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[23]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-592, AND MASS SPECTROMETRY.
TISSUE=Epithelium;
DOI=10.1038/nbt1240; PubMed=16964243 [NCBI, ExPASy, EBI, Israel, Japan]
Beausoleil S.A.,
Villen J.,
Gerber S.A.,
Rush J.,
Gygi S.P.;
"A probability-based approach for high-throughput protein phosphorylation analysis and site localization.";
Nat. Biotechnol. 24:1285-1292(2006).
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[24]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-592 AND SER-812, AND MASS SPECTROMETRY.
TISSUE=Epithelium;
DOI=10.1021/pr070152u; PubMed=17924679 [NCBI, ExPASy, EBI, Israel, Japan]
Yu L.-R.,
Zhu Z.,
Chan K.C.,
Issaq H.J.,
Dimitrov D.S.,
Veenstra T.D.;
"Improved titanium dioxide enrichment of phosphopeptides from HeLa cells and high confident phosphopeptide identification by cross-validation of MS/MS and MS/MS/MS spectra.";
J. Proteome Res. 6:4150-4162(2007).
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[25]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-382 AND SER-384, AND MASS SPECTROMETRY.
DOI=10.1073/pnas.0611217104; PubMed=17287340 [NCBI, ExPASy, EBI, Israel, Japan]
Molina H.,
Horn D.M.,
Tang N.,
Mathivanan S.,
Pandey A.;
"Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.";
Proc. Natl. Acad. Sci. U.S.A. 104:2199-2204(2007).
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[26]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-486, AND MASS SPECTROMETRY.
DOI=10.1021/pr0705441; PubMed=18220336 [NCBI, ExPASy, EBI, Israel, Japan]
Cantin G.T.,
Yi W.,
Lu B.,
Park S.K.,
Xu T.,
Lee J.-D.,
Yates J.R. III;
"Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis.";
J. Proteome Res. 7:1346-1351(2008).
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[27]
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PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-190; SER-482; TYR-579; THR-592; SER-792; SER-810 AND SER-812, AND MASS SPECTROMETRY.
DOI=10.1073/pnas.0805139105; PubMed=18669648 [NCBI, ExPASy, EBI, Israel, Japan]
Dephoure N.,
Zhou C.,
Villen J.,
Beausoleil S.A.,
Bakalarski C.E.,
Elledge S.J.,
Gygi S.P.;
"A quantitative atlas of mitotic phosphorylation.";
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008).
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