[1]
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NUCLEOTIDE SEQUENCE [MRNA], AND TISSUE SPECIFICITY.
STRAIN=cv. Nipponbare;
TISSUE=Seedling;
Morita S.,
Kaminaka H.,
Yokoi H.,
Masumura T.,
Tanaka K.;
"Cloning and characterization of cytosolic ascorbate peroxidase cDNA from rice.";
(er) Plant Gene Register PGR97-012.
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[2]
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NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1101/gr.3869505; PubMed=16109971 [NCBI, ExPASy, EBI, Israel, Japan]
The rice chromosome 3 sequencing consortium;
Buell C.R.,
Yuan Q.,
Ouyang S.,
Liu J.,
Zhu W.,
Wang A.,
Maiti R.,
Haas B.,
Wortman J.,
Pertea M.,
Jones K.M.,
Kim M.,
Overton L.,
Tsitrin T.,
Fadrosh D.,
Bera J.,
Weaver B.,
Jin S.,
Johri S., ![]()
Reardon M.,
Webb K.,
Hill J.,
Moffat K.,
Tallon L.,
Van Aken S.,
Lewis M.,
Utterback T.,
Feldblyum T.,
Zismann V.,
Iobst S.,
Hsiao J.,
de Vazeille A.R.,
Salzberg S.L.,
White O.,
Fraser C.M.,
Yu Y.,
Kim H.-I.,
Rambo T.,
Currie J.,
Collura K.,
Kernodle-Thompson S.,
Wei F.,
Kudrna K.,
Ammiraju J.S.S.,
Luo M.,
Goicoechea J.L.,
Wing R.A.,
Henry D.,
Oates R.,
Palmer M.,
Pries G.,
Saski C.,
Simmons J.,
Soderlund C.,
Nelson W.,
de la Bastide M.,
Spiegel L.,
Nascimento L.,
Huang E.,
Preston R.,
Zutavern T.,
Palmer L.,
O'Shaughnessy A.,
Dike S.,
McCombie W.R.,
Minx P.,
Cordum H.,
Wilson R.,
Jin W.,
Lee H.R.,
Jiang J.,
Jackson S.;
"Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.";
Genome Res. 15:1284-1291(2005).
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[3]
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NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1038/nature03895; PubMed=16100779 [NCBI, ExPASy, EBI, Israel, Japan]
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
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[4]
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GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
DOI=10.1101/gr.5509507; PubMed=17210932 [NCBI, ExPASy, EBI, Israel, Japan]
The rice annotation project (RAP);
"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.";
Genome Res. 17:175-183(2007).
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[5]
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NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1371/journal.pbio.0030038; PubMed=15685292 [NCBI, ExPASy, EBI, Israel, Japan]
Yu J.,
Wang J.,
Lin W.,
Li S.,
Li H.,
Zhou J.,
Ni P.,
Dong W.,
Hu S.,
Zeng C.,
Zhang J.,
Zhang Y.,
Li R.,
Xu Z.,
Li S.,
Li X.,
Zheng H.,
Cong L.,
Lin L., ![]()
Yin J.,
Geng J.,
Li G.,
Shi J.,
Liu J.,
Lv H.,
Li J.,
Wang J.,
Deng Y.,
Ran L.,
Shi X.,
Wang X.,
Wu Q.,
Li C.,
Ren X.,
Wang J.,
Wang X.,
Li D.,
Liu D.,
Zhang X.,
Ji Z.,
Zhao W.,
Sun Y.,
Zhang Z.,
Bao J.,
Han Y.,
Dong L.,
Ji J.,
Chen P.,
Wu S.,
Liu J.,
Xiao Y.,
Bu D.,
Tan J.,
Yang L.,
Ye C.,
Zhang J.,
Xu J.,
Zhou Y.,
Yu Y.,
Zhang B.,
Zhuang S.,
Wei H.,
Liu B.,
Lei M.,
Yu H.,
Li Y.,
Xu H.,
Wei S.,
He X.,
Fang L.,
Zhang Z.,
Zhang Y.,
Huang X.,
Su Z.,
Tong W.,
Li J.,
Tong Z.,
Li S.,
Ye J.,
Wang L.,
Fang L.,
Lei T.,
Chen C.-S.,
Chen H.-C.,
Xu Z.,
Li H.,
Huang H.,
Zhang F.,
Xu H.,
Li N.,
Zhao C.,
Li S.,
Dong L.,
Huang Y.,
Li L.,
Xi Y.,
Qi Q.,
Li W.,
Zhang B.,
Hu W.,
Zhang Y.,
Tian X.,
Jiao Y.,
Liang X.,
Jin J.,
Gao L.,
Zheng W.,
Hao B.,
Liu S.-M.,
Wang W.,
Yuan L.,
Cao M.,
McDermott J.,
Samudrala R.,
Wang J.,
Wong G.K.-S.,
Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
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[6]
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PROTEIN SEQUENCE OF 2-11, AND INDUCTION.
STRAIN=cv. Nipponbare;
TISSUE=Leaf;
DOI=10.1002/1615-9861(200208)2:8<947::AID-PROT947>3.0.CO;2-J; PubMed=12203890 [NCBI, ExPASy, EBI, Israel, Japan]
Agrawal G.K.,
Rakwal R.,
Yonekura M.,
Kubo A.,
Saji H.;
"Proteome analysis of differentially displayed proteins as a tool for investigating ozone stress in rice (Oryza sativa L.) seedlings.";
Proteomics 2:947-959(2002).
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[7]
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PROTEIN SEQUENCE OF 2-11; 25-34 AND 107-116, AND SUBCELLULAR LOCATION.
STRAIN=cv. Nipponbare;
TISSUE=Anther, Callus, Panicle, Root, Sheath, and Stem;
DOI=10.1093/nar/gkh020; PubMed=14681440 [NCBI, ExPASy, EBI, Israel, Japan]
Komatsu S.,
Kojima K.,
Suzuki K.,
Ozaki K.,
Higo K.;
"Rice proteome database based on two-dimensional polyacrylamide gel electrophoresis: its status in 2003.";
Nucleic Acids Res. 32:D388-D392(2004).
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[8]
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INDUCTION.
DOI=10.1093/jexbot/52.354.145; PubMed=11181723 [NCBI, ExPASy, EBI, Israel, Japan]
Sato Y.,
Murakami T.,
Funatsuki H.,
Matsuba S.,
Saruyama H.,
Tanida M.;
"Heat shock-mediated APX gene expression and protection against chilling injury in rice seedlings.";
J. Exp. Bot. 52:145-151(2001).
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[9]
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TISSUE SPECIFICITY, AND INDUCTION.
DOI=10.1016/j.gene.2003.08.017; PubMed=14644501 [NCBI, ExPASy, EBI, Israel, Japan]
Agrawal G.K.,
Jwa N.-S.,
Iwahashi H.,
Rakwal R.;
"Importance of ascorbate peroxidases OsAPX1 and OsAPX2 in the rice pathogen response pathways and growth and reproduction revealed by their transcriptional profiling.";
Gene 322:93-103(2003).
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[10]
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NOMENCLATURE.
DOI=10.1007/s00239-004-2666-z; PubMed=15599508 [NCBI, ExPASy, EBI, Israel, Japan]
Teixeira F.K.,
Menezes-Benavente L.,
Margis R.,
Margis-Pinheiro M.;
"Analysis of the molecular evolutionary history of the ascorbate peroxidase gene family: inferences from the rice genome.";
J. Mol. Evol. 59:761-770(2004).
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[11]
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FUNCTION, ENZYME REGULATION, AND BIOPHYSICOCHEMICAL PROPERTIES.
DOI=10.1007/s10529-004-6587-0; PubMed=15685422 [NCBI, ExPASy, EBI, Israel, Japan]
Lu Z.,
Takano T.,
Liu S.;
"Purification and characterization of two ascorbate peroxidases of rice (Oryza sativa L.) expressed in Escherichia coli.";
Biotechnol. Lett. 27:63-67(2005).
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