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UniProtKB/Swiss-Prot entry Q0DHL2


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name LAC12_ORYSJ
Primary accession number Q0DHL2
Secondary accession numbers Q0DHL3 Q65XF7
Integrated into Swiss-Prot on June 26, 2007
Sequence was last modified on October 17, 2006 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 18)
Name and origin of the protein
Protein name Laccase-12/13 [Precursor]
Synonyms EC 1.10.3.2
Benzenediol:oxygen oxidoreductase 12/13
Urishiol oxidase 12/13
Diphenol oxidase 12/13
Gene names
Name: LAC12
OrderedLocusNames: Os05g0458500, LOC_Os05g38410
ORFNames: OJ1362_D02.9, OsJ_018046
and
Name: LAC13
OrderedLocusNames: Os05g0458600, LOC_Os05g38420
ORFNames: OJ1362_D02.10
From
Oryza sativa subsp. japonica (Rice) [TaxID: 39947] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (OS05G0458500 AND OS05G0458600).
STRAIN=cv. Nipponbare;
DOI=10.1007/s00438-005-0039-y; PubMed=16261349 [NCBI, ExPASy, EBI, Israel, Japan]
Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J., Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F., Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
"A fine physical map of the rice chromosome 5.";
Mol. Genet. Genomics 274:337-345(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (OS05G0458500 AND OS05G0458600).
STRAIN=cv. Nipponbare;
DOI=10.1038/nature03895; PubMed=16100779 [NCBI, ExPASy, EBI, Israel, Japan]
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[3]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
DOI=10.1101/gr.5509507; PubMed=17210932 [NCBI, ExPASy, EBI, Israel, Japan]
The rice annotation project (RAP);
"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.";
Genome Res. 17:175-183(2007).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (OS05G0458500 AND OS05G0458600).
STRAIN=cv. Nipponbare;
DOI=10.1371/journal.pbio.0030038; PubMed=15685292 [NCBI, ExPASy, EBI, Israel, Japan]
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (OS05G0458600).
STRAIN=cv. Nipponbare;
DOI=10.1126/science.1081288; PubMed=12869764 [NCBI, ExPASy, EBI, Israel, Japan]
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.";
Science 301:376-379(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AC105770; AAU44018.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP008211; BAF17660.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
CM000142; EAZ34563.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP008211; BAF17661.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC105770; AAU44019.1; ALT_SEQ; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK068047; -; NOT_ANNOTATED_CDS; mRNA.[EMBL / GenBank / DDBJ]
RefSeq NP_001055746.1; -.
NP_001055747.1; -.
UniGene Os.51049
3D structure databases
ModBase Q0DHL2.
Family and domain databases
InterPro IPR001117; Cu-oxidase.
IPR011706; Cu-oxidase_2.
IPR011707; Cu-oxidase_3.
IPR002355; Cu_oxidase_Cu_BS.
IPR008972; Cupredoxin.
IPR017761; Laccase.
Graphical view of domain structure.
Gene3D G3DSA:2.60.40.420; Cupredoxin; 3.
Pfam PF00394; Cu-oxidase; 1.
PF07731; Cu-oxidase_2; 1.
PF07732; Cu-oxidase_3; 1.
Pfam graphical view of domain structure.
PROSITE PS00079; MULTICOPPER_OXIDASE1; 1.
PS00080; MULTICOPPER_OXIDASE2; 1.
BLOCKS Q0DHL2.
Genome annotation databases
GeneID 4339003; -.
4339004; -.
KEGG osa:4339003; -.
osa:4339004; -.
Other
ProtoNet Q0DHL2.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Apoplast; Copper; Glycoprotein; Lignin degradation; Metal-binding; Oxidoreductase; Repeat; Secreted; Signal.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    27  27     Potential. 
CHAIN   28   574  547     Laccase-12/13. PRO_0000291897
DOMAIN   35   151  117     Plastocyanin-like 1. 
DOMAIN   161   314  154     Plastocyanin-like 2. 
DOMAIN   424   558  135     Plastocyanin-like 3. 
METAL   85    85        Copper 1 (By similarity). 
METAL   87    87        Copper 2 (By similarity). 
METAL   130   130        Copper 2 (By similarity). 
METAL   132   132        Copper 3 (By similarity). 
METAL   475   475        Copper 4 (By similarity). 
METAL   478   478        Copper 1 (By similarity). 
METAL   480   480        Copper 3 (By similarity). 
METAL   537   537        Copper 3 (By similarity). 
METAL   538   538        Copper 4 (By similarity). 
METAL   539   539        Copper 2 (By similarity). 
METAL   543   543        Copper 4 (By similarity). 
CARBOHYD   81    81        N-linked (GlcNAc...) (Potential). 
CARBOHYD   173   173        N-linked (GlcNAc...) (Potential). 
CARBOHYD   190   190        N-linked (GlcNAc...) (Potential). 
CARBOHYD   206   206        N-linked (GlcNAc...) (Potential). 
CARBOHYD   242   242        N-linked (GlcNAc...) (Potential). 
CARBOHYD   302   302        N-linked (GlcNAc...) (Potential). 
CARBOHYD   335   335        N-linked (GlcNAc...) (Potential). 
CARBOHYD   342   342        N-linked (GlcNAc...) (Potential). 
CARBOHYD   381   381        N-linked (GlcNAc...) (Potential). 
CARBOHYD   388   388        N-linked (GlcNAc...) (Potential). 
CARBOHYD   398   398        N-linked (GlcNAc...) (Potential). 
CARBOHYD   434   434        N-linked (GlcNAc...) (Potential). 
CARBOHYD   441   441        N-linked (GlcNAc...) (Potential). 
CARBOHYD   447   447        N-linked (GlcNAc...) (Potential). 
Sequence information
Length: 574 AA [This is the length of the unprocessed precursor] Molecular weight: 62348 Da [This is the MW of the unprocessed precursor] CRC64: 27DD915DD4F41C13 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MAAASSVLRC CLLVAALMTL SAMGAEAITR QYLFDVQTTS VTRLCSTKSI VTVNGQYPGP 

        70         80         90        100        110        120 
TLFAREGDHV EVTVVNHSPY NMSIHWHGIR QLLSGWADGP SYITQCPIQP GGSYVYRFTI 

       130        140        150        160        170        180 
TGQRGTLWWH AHISWLRATV HGPMVILPPA GVGYPFPAPH EEVPIMFGEW WNNDTEAVIS 

       190        200        210        220        230        240 
QALQTGGGPN ISDAYTLNGL PGPLYNCSAQ DTFKLKVKPG KTYMLRLINA ALNDELFFSI 

       250        260        270        280        290        300 
ANHTLTVVDV DALYVKPFTV DTLIIAPGQT SNVLLTAKPT YPGASYYMLA RPYTTTQGTF 

       310        320        330        340        350        360 
DNTTVAGVLE YDDPCPTTAA GKIVPIFSPT LPQINDTNAV SNFTAKLRSL ASAGYPAAVP 

       370        380        390        400        410        420 
QQVDHRFFFT VGLGTHPCAV NGTCQGPNGS RFAASINNVS FVLPATALLQ SHFAGKSKGV 

       430        440        450        460        470        480 
YASNFPYYPL NPFNYTGTPP NNTNVMNGTK VLVLPYGANV ELVMQDTSIL GAESHPLHLH 

       490        500        510        520        530        540 
GFNFFVVGQG FGNFDPINDP AKFNLYDPVE RNTVGVPAGG WVAIRFHADN PGVWFMHCHL 

       550        560        570 
EVHMSWGLKM AWLVLDGSRP DQKLPPPPLD LPKC 

Q0DHL2 in FASTA format

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