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UniProtKB/Swiss-Prot entry Q0D9C4


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name CATA2_ORYSJ
Primary accession number Q0D9C4
Secondary accession numbers P55309 Q4PJT9 Q5Z7P3 Q9SB22
Integrated into Swiss-Prot on July 10, 2007
Sequence was last modified on October 17, 2006 (Sequence version 1)
Annotations were last modified on    July 22, 2008 (Entry version 17)
Name and origin of the protein
Protein name Catalase isozyme B
Synonyms CAT-B
EC 1.11.1.6
Gene name
Name: CATB
OrderedLocusNames: Os06g0727200, LOC_Os06g51150
ORFNames: P0017G10.17, OsJ_021830
From
Oryza sativa subsp. japonica (Rice) [TaxID: 39947] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; Ehrhartoideae; Oryzeae; Oryza.
Protein existence 2: Evidence at transcript level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Nipponbare;
DOI=10.1104/pp.105.3.1015; PubMed=8058828 [NCBI, ExPASy, EBI, Israel, Japan]
Morita S., Tasaka M., Fujisawa H., Ushimaru T., Tsuji H.;
"A cDNA clone encoding a rice catalase isozyme.";
Plant Physiol. 105:1015-1016(1994).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
TISSUE=Seedling leaf;
DOI=10.1007/s001220050861; AGRICOLA=IND21967300
Iwamoto M., Maekawa M., Saito A., Higo H., Higo K.;
"Evolutionary relationship of plant catalase genes inferred from exon-intron structures: isozyme divergence after the separation of monocots and dicots.";
Theor. Appl. Genet. 97:9-19(1998).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1038/nature03895; PubMed=16100779 [NCBI, ExPASy, EBI, Israel, Japan]
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[4]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
DOI=10.1101/gr.5509507; PubMed=17210932 [NCBI, ExPASy, EBI, Israel, Japan]
The rice annotation project (RAP);
"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana.";
Genome Res. 17:175-183(2007).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
DOI=10.1371/journal.pbio.0030038; PubMed=15685292 [NCBI, ExPASy, EBI, Israel, Japan]
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Nipponbare;
DOI=10.1126/science.1081288; PubMed=12869764 [NCBI, ExPASy, EBI, Israel, Japan]
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.";
Science 301:376-379(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
D26484; BAA05494.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
D64013; BAA34204.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP004685; BAD61813.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AP008212; BAF20549.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
CM000143; EAZ38347.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK069446; -; NOT_ANNOTATED_CDS; mRNA.[EMBL / GenBank / DDBJ]
RefSeq NP_001058635.1; -.
UniGene Os.39055
3D structure databases
HSSP P46206; 1M7S. [HSSP ENTRY / PDB]
ModBase Q0D9C4.
Protein family/group databases
PeroxiBase 5145; OsKat02.
Organism-specific databases
Gramene P55309; -.
Family and domain databases
InterPro IPR002226; Catalase.
IPR011614; Catalase_N.
Graphical view of domain structure.
Gene3D G3DSA:2.40.180.10; Catalase_N; 1.
PANTHER PTHR11465; Catalase; 1.
Pfam PF00199; Catalase; 1.
Pfam graphical view of domain structure.
PRINTS PR00067; CATALASE.
ProDom PD000510; Catalase; 1.
[Domain structure / List of seq. sharing at least 1 domain]
PROSITE PS00437; CATALASE_1; 1.
PS00438; CATALASE_2; 1.
BLOCKS Q0D9C4.
Genome annotation databases
GeneID 4342124; -.
KEGG osa:4342124; -.
Other
ProtoNet Q0D9C4.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Glyoxysome; Heme; Hydrogen peroxide; Iron; Metal-binding; Oxidoreductase; Peroxidase; Peroxisome.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   492  492     Catalase isozyme B. PRO_0000084953
ACT_SITE   65    65        By similarity. 
ACT_SITE   138   138        By similarity. 
METAL   348   348        Iron (heme axial ligand) (By similarity). 
CONFLICT   8     8        P -> A (in Ref. 1; BAA05494). 
CONFLICT   118   118        D -> E (in Ref. 2; BAA34204). 
CONFLICT   142   142        V -> G (in Ref. 1; BAA05494). 
CONFLICT   199   199        Y -> H (in Ref. 2; BAA34204). 
Sequence information
Length: 492 AA [This is the length of the unprocessed precursor] Molecular weight: 56587 Da [This is the MW of the unprocessed precursor] CRC64: 88E13AC2AB1A8E26 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MDPYKHRPSS GSNSTFWTTN SGAPVWNNNS ALTVGERGPI LLEDYHLIEK LAQFDRERIP 

        70         80         90        100        110        120 
ERVVHARGAS AKGFFEVTHD ISHLTCADFL RAPGVQTPVI VRFSTVVHER GSPETLRDPR 

       130        140        150        160        170        180 
GFAVKFYTRE GNFDLVGNNM PVFFIRDGMK FPDMVHAFKP SPKTNMQENW RIVDFFSHHP 

       190        200        210        220        230        240 
ESLHMFSFLF DDVGIPLNYR HMEGFGVNTY TLINKDGKPH LVKFHWKPTC GVKCLLDDEA 

       250        260        270        280        290        300 
VTVGGTCHSH ATKDLTDSIA AGNYPEWKLY IQTIDPDHED RFDFDPLDVT KTWPEDIIPL 

       310        320        330        340        350        360 
QPVGRMVLNK NIDNFFAENE QLAFCPAIIV PGIHYSDDKL LQTRIFSYAD TQRHRLGPNY 

       370        380        390        400        410        420 
LMLPVNAPKC AYHNNHHDGS MNFMHRDEEV NYFPSRFDAA RHAEKVPIPP RVLTGCREKC 

       430        440        450        460        470        480 
VIDKENNFQQ AGERYRSFDP ARQDRFLQRW VDALSDPRIT HELRGIWISY WSQCDASLGQ 

       490 
KLASRLNLKP NM 

Q0D9C4 in FASTA format

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