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UniProtKB/Swiss-Prot entry Q06173

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name PHNS1_DESVH
Primary accession number Q06173
Secondary accession numbers None
Integrated into Swiss-Prot on February 1, 1995
Sequence was last modified on May 24, 2004 (Sequence version 2)
Annotations were last modified on    September 2, 2008 (Entry version 64)
Name and origin of the protein
Protein name Periplasmic [NiFe] hydrogenase small subunit 1 [Precursor]
Synonyms EC 1.12.2.1
NiFe hydrogenlyase small chain 1
Gene name
Name: hynB1
Synonyms: hynB-1
OrderedLocusNames: DVU_1921
From
Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) [TaxID: 882] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.
Protein existence 1: Evidence at protein level;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nbt959; PubMed=15077118 [NCBI, ExPASy, EBI, Israel, Japan]
Heidelberg J.F., Seshadri R., Haveman S.A., Hemme C.L., Paulsen I.T., Kolonay J.F., Eisen J.A., Ward N.L., Methe B.A., Brinkac L.M., Daugherty S.C., DeBoy R.T., Dodson R.J., Durkin A.S., Madupu R., Nelson W.C., Sullivan S.A., Fouts D.E., Haft D.H., Selengut J., Peterson J.D., Davidsen T.M., Zafar N., Zhou L., Radune D., Dimitrov G., Hance M., Tran K., Khouri H.M., Gill J., Utterback T.R., Feldblyum T.V., Wall J.D., Voordouw G., Fraser C.M.;
"The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.";
Nat. Biotechnol. 22:554-559(2004).
[2]
 NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-55, AND MUTAGENESIS OF ARG-18.
PubMed=1479348 [NCBI, ExPASy, EBI, Israel, Japan]
Niviere V., Wong S.L., Voordouw G.;
"Site-directed mutagenesis of the hydrogenase signal peptide consensus box prevents export of a beta-lactamase fusion protein.";
J. Gen. Microbiol. 138:2173-2183(1992).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AE017285; AAS96397.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_011138.1; -.
3D structure databases
SMR Q06173; 51-317.
ModBase Q06173.
Enzyme and pathway databases
BioCyc DVUL882:DVU_1921-MON; -.
Family and domain databases
InterPro IPR001821; NiFe_hyd_ssu.
IPR013634; NiFe_hyd_ssu_N.
IPR006137; OxRdtase_q6.
IPR006311; Tat.
Graphical view of domain structure.
Pfam PF08425; NiFe_dehyd_N; 1.
PF01058; Oxidored_q6; 1.
Pfam graphical view of domain structure.
PIRSF PIRSF000310; NiFe_hyd_ssu; 1.
PRINTS PR00614; NIHGNASESMLL.
TIGRFAMs TIGR00391; hydA; 1.
TIGR01409; TAT_signal_seq; 1.
PROSITE PS51318; TAT; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS Q06173.
Genome annotation databases
GeneID 2793337; -.
GenomeReviews AE017285_GR; DVU_1921.
KEGG dvu:DVU1921; -.
TIGR DVU_1921; -.
Phylogenomic databases
HOGENOM Q06173; -.
Other
ProtoNet Q06173.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3Fe-4S; 4Fe-4S; Complete proteome; Iron; Iron-sulfur; Metal-binding; Oxidoreductase; Periplasm; Signal.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
SIGNAL   1    49  49     Tat-type signal (Potential). 
CHAIN   50   317  268     Periplasmic [NiFe] hydrogenase small subunit 1. PRO_0000013417
METAL   67    67        Iron-sulfur 1 (4Fe-4S) (By similarity). 
METAL   70    70        Iron-sulfur 1 (4Fe-4S) (By similarity). 
METAL   164   164        Iron-sulfur 1 (4Fe-4S) (By similarity). 
METAL   200   200        Iron-sulfur 1 (4Fe-4S) (By similarity). 
METAL   238   238        Iron-sulfur 2 (4Fe-4S); via pros nitrogen (By similarity). 
METAL   241   241        Iron-sulfur 2 (4Fe-4S) (By similarity). 
METAL   266   266        Iron-sulfur 2 (4Fe-4S) (By similarity). 
METAL   272   272        Iron-sulfur 2 (4Fe-4S) (By similarity). 
METAL   281   281        Iron-sulfur 3 (3Fe-4S) (By similarity). 
METAL   299   299        Iron-sulfur 3 (3Fe-4S) (By similarity). 
METAL   302   302        Iron-sulfur 3 (3Fe-4S) (By similarity). 
MUTAGEN   18    18        R->E: Completely inhibits export and processing of the fusion protein. 
Sequence information
Length: 317 AA [This is the length of the unprocessed precursor] Molecular weight: 34236 Da [This is the MW of the unprocessed precursor] CRC64: E579C0215F1C5F47 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MRFSVGLGKE GAEERLARRG VSRRDFLKFC TAIAVTMGMG PAFAPEVARA LTGSRRPSVV 

        70         80         90        100        110        120 
YLHNAECTGC SESVLRAFQP YLDELILDTI SLDYHETIMA AAGDAAEAAL HQAVANPDGF 

       130        140        150        160        170        180 
ICIVEGAIPT ADNGIYGKVA NHTMLSICSD IVPKAKAVIA YGTCATFGGV QAAKPNPTGA 

       190        200        210        220        230        240 
KGLNDALKHL GVNAINLAGC PPNPYNLVGT LVYYLKNNAA PEMDEFNRPL MFFGQSVHDN 

       250        260        270        280        290        300 
CPRLKHFDAG EFAPSFESEE ARKGWCLYEL GCKGPSTMNN CPKIKFNQTN WPVEAGHPCI 

       310 
GCSEPDFWDE KSPFYES
Q06173 in FASTA format

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