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UniProtKB/Swiss-Prot entry P84122


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name THRB_SALSA
Primary accession number P84122
Secondary accession numbers None
Integrated into Swiss-Prot on September 13, 2004
Sequence was last modified on August 31, 2004 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 30)
Name and origin of the protein
Protein name Thrombin [Fragments]
Synonym EC 3.4.21.5
Contains Thrombin light chain
Thrombin heavy chain
Gene name None
From
Salmo salar (Atlantic salmon) [TaxID: 8030] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo.
Protein existence 1: Evidence at protein level;
References
[1]
PROTEIN SEQUENCE, CATALYTIC ACTIVITY, SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY.
DOI=10.1016/j.jbbm.2004.04.016; PubMed=15236909 [NCBI, ExPASy, EBI, Israel, Japan]
Manseth E., Skjervold P.O., Flengsrud R.;
"Sample displacement chromatography of Atlantic Salmon (Salmo salar) thrombin.";
J. Biochem. Biophys. Methods 60:39-47(2004).
Comments
  • FUNCTION: Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing (By similarity).
  • CATALYTIC ACTIVITY: Selective cleavage of Arg-|-Gly bonds in fibrinogen to form fibrin and release fibrinopeptides A and B.
  • SUBCELLULAR LOCATION: Secreted.
  • TISSUE SPECIFICITY: Expressed by the liver and secreted in plasma.
  • PTM: The gamma-carboxyglutamyl residues, which bind calcium ions, result from the carboxylation of glutamyl residues by a microsomal enzyme, the vitamin K-dependent carboxylase. The modified residues are necessary for the calcium-dependent interaction with a negatively charged phospholipid surface, which is essential for the conversion of prothrombin to thrombin.
  • PTM: N-glycosylated (By similarity).
  • MISCELLANEOUS: Prothrombin is activated on the surface of a phospholipid membrane that binds the amino end of prothrombin and factors Va and Xa in Ca-dependent interactions; factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. The activation process starts slowly because factor V itself has to be activated by the initial, small amounts of thrombin.
  • MISCELLANEOUS: Thrombin can itself cleave the N-terminal fragment (fragment 1) of the prothrombin, prior to its activation by factor Xa.
  • SIMILARITY: Belongs to the peptidase S1 family [view classification].
  • SIMILARITY: Contains 1 peptidase S1 domain [view classification].
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
3D structure databases
ModBase P84122.
Ontologies
GO
GO:0005576; Cellular component: extracellular region (inferred from electronic annotation from UniProtKB-KW).
GO:0005509; Molecular function: calcium ion binding (inferred from electronic annotation from InterPro).
GO:0004252; Molecular function: serine-type endopeptidase activity (inferred from electronic annotation from InterPro).
GO:0007596; Biological process: blood coagulation (inferred from electronic annotation from InterPro).
GO:0006508; Biological process: proteolysis (inferred from electronic annotation from InterPro).
QuickGo view.
Family and domain databases
InterPro IPR000001; Kringle.
IPR001254; Peptidase_S1_S6.
IPR012051; Peptidase_S1A_pr.
IPR000294; VitK_dep_GLA.
Graphical view of domain structure.
PANTHER PTHR19355:SF61; Peptidase_S1A_pr; 1.
PROSITE PS00011; GLA_1; PARTIAL.
PS50998; GLA_2; PARTIAL.
PS00021; KRINGLE_1; PARTIAL.
PS50070; KRINGLE_2; PARTIAL.
PS50240; TRYPSIN_DOM; PARTIAL.
PS00134; TRYPSIN_HIS; PARTIAL.
PS00135; TRYPSIN_SER; PARTIAL.
PROSITE graphical view of domain structure (profiles).
ProtoNet P84122.
Phylogenomic databases
HOVERGEN P84122; -.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Blood coagulation; Calcium; Direct protein sequencing; Gamma-carboxyglutamic acid; Glycoprotein; Hydrolase; Protease; Secreted; Serine protease.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1    18  18     Thrombin light chain. PRO_0000028183
CHAIN   19    36  18     Thrombin heavy chain. PRO_0000028184
DOMAIN   <19   >36  >18     Peptidase S1. 
NON_CONS   18    19         
NON_TER   36    36         
Sequence information
Length: 36 AA [This is the length of the partial sequence of the unprocessed precursor] Molecular weight: 3784 Da [This is the MW of the partial sequence of the unprocessed precursor] CRC64: E451D38AE5FCA666 [This is a checksum on the sequence]
        10         20         30 
SFGSGELVXG EXPXFEKIIV KGIDAEVASA PMQVML 

P84122 in FASTA format

View entry in original UniProtKB/Swiss-Prot format
View entry in raw text format (no links)
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BLAST logo BLAST submission on ExPASy/SIB
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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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NPSA logo NPSA Sequence analysis tools

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