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UniProtKB/Swiss-Prot entry P83223


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name FRDA_SHEON
Primary accession number P83223
Secondary accession numbers None
Integrated into Swiss-Prot on May 27, 2002
Sequence was last modified on November 25, 2002 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 63)
Name and origin of the protein
Protein name Fumarate reductase flavoprotein subunit [Precursor]
Synonyms EC 1.3.99.1
Flavocytochrome c
FL cyt
Gene name
OrderedLocusNames: SO_0970
From
Shewanella oneidensis [TaxID: 70863] [HAMAP proteome]
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND INDUCTION.
STRAIN=MR-1;
DOI=10.1128/AEM.67.7.3236-3244.2001; PubMed=11425747 [NCBI, ExPASy, EBI, Israel, Japan]
Tsapin A.I., Vandenberghe I., Nealson K.H., Scott J.H., Meyer T.E., Cusanovich M.A., Harada E., Kaizu T., Akutsu H., Leys D., Van Beeumen J.J.;
"Identification of a small tetraheme cytochrome c and a flavocytochrome c as two of the principal soluble cytochromes c in Shewanella oneidensis strain MR1.";
Appl. Environ. Microbiol. 67:3236-3244(2001).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=MR-1;
DOI=10.1038/nbt749; PubMed=12368813 [NCBI, ExPASy, EBI, Israel, Japan]
Heidelberg J.F., Paulsen I.T., Nelson K.E., Gaidos E.J., Nelson W.C., Read T.D., Eisen J.A., Seshadri R., Ward N.L., Methe B.A., Clayton R.A., Meyer T., Tsapin A., Scott J., Beanan M.J., Brinkac L.M., Daugherty S.C., DeBoy R.T., Dodson R.J., Durkin A.S., Haft D.H., Kolonay J.F., Madupu R., Peterson J.D., Umayam L.A., White O., Wolf A.M., Vamathevan J.J., Weidman J.F., Impraim M., Lee K., Berry K.J., Lee C., Mueller J., Khouri H.M., Gill J., Utterback T.R., McDonald L.A., Feldblyum T.V., Smith H.O., Venter J.C., Nealson K.H., Fraser C.M.;
"Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.";
Nat. Biotechnol. 20:1118-1123(2002).
[3]
X-RAY CRYSTALLOGRAPHY (2.5 ANGSTROMS) IN COMPLEX WITH FAD; HEMES AND SUBSTRATE.
STRAIN=MR-1;
DOI=10.1038/70051; PubMed=10581551 [NCBI, ExPASy, EBI, Israel, Japan]
Leys D., Tsapin A.S., Nealson K.H., Meyer T.E., Cusanovich M.A., Van Beeumen J.J.;
"Structure and mechanism of the flavocytochrome c fumarate reductase of Shewanella putrefaciens MR-1.";
Nat. Struct. Biol. 6:1113-1117(1999).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AE014299; AAN54044.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_716599.1; -.
3D structure databases
PDB
1D4C; X-ray; 2.90 A; A/B/C/D=25-596.[ExPASy / RCSB / EBI]
1D4D; X-ray; 2.50 A; A=25-596.[ExPASy / RCSB / EBI]
1D4E; X-ray; 2.80 A; A=25-596.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1D4C; -.
1D4D; -.
1D4E; -.
ModBase P83223.
Enzyme and pathway databases
BioCyc SONE211586:SO_0970-MON; -.
Family and domain databases
InterPro IPR003953; FAD_bind2_N.
IPR012286; Fcc3_N_cyt.
IPR010960; Flavocytochrome_c.
IPR011031; Multihaem_cyt.
Graphical view of domain structure.
Gene3D G3DSA:1.10.1130.10; Fcc3_N_cyt; 1.
Pfam PF00890; FAD_binding_2; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01813; flavo_cyto_c; 1.
PROSITE PS51008; MULTIHEME_CYTC; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS P83223.
Genome annotation databases
GeneID 1168814; -.
GenomeReviews AE014299_GR; SO_0970.
KEGG son:SO_0970; -.
NMPDR fig|211586.1.peg.905; -.
TIGR SO_0970; -.
Phylogenomic databases
HOGENOM P83223; -.
Other
ProtoNet P83223.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Complete proteome; Electron transport; FAD; Flavoprotein; Heme; Iron; Metal-binding; Oxidoreductase; Periplasm; Signal; Transport.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    25  25     Probable. 
CHAIN   26   596  571     Fumarate reductase flavoprotein subunit. PRO_0000010345
DOMAIN   26   141  116     Cytochrome c. 
NP_BIND   156   167  12     FAD. 
NP_BIND   180   181  2     FAD. 
NP_BIND   187   189  3     FAD. 
NP_BIND   193   195  3     FAD. 
NP_BIND   572   575  4     FAD. 
REGION   142   596  455     Flavoprotein-like. 
ACT_SITE   426   426        Proton donor (By similarity). 
METAL   34    34        Iron (heme 2 axial ligand). 
METAL   44    44        Iron (heme 1 axial ligand). 
METAL   67    67        Iron (heme 2 axial ligand). 
METAL   85    85        Iron (heme 3 axial ligand). 
METAL   88    88        Iron (heme 4 axial ligand). 
METAL   99    99        Iron (heme 3 axial ligand). 
METAL   102   102        Iron (heme 1 axial ligand). 
METAL   113   113        Iron (heme 4 axial ligand). 
BINDING   40    40        Heme 1 (covalent). 
BINDING   43    43        Heme 1 (covalent). 
BINDING   63    63        Heme 2 (covalent). 
BINDING   66    66        Heme 2 (covalent). 
BINDING   95    95        Heme 3 (covalent). 
BINDING   98    98        Heme 3 (covalent). 
BINDING   109   109        Heme 4 (covalent). 
BINDING   112   112        Heme 4 (covalent). 
BINDING   389   389        Substrate. 
BINDING   401   401        Substrate. 
BINDING   528   528        Substrate. 
BINDING   569   569        Substrate. 
CONFLICT   71    71        K -> E (in Ref. 1). 
CONFLICT   282   282        A -> S (in Ref. 1). 
HELIX   30    38  9      
TURN   41    43  3      
STRAND   44    46  3      
HELIX   57    67  11      
HELIX   70    75  6      
STRAND   79    81  3      
HELIX   95    97  3      
STRAND   101   103  3      
HELIX   108   111  4      
TURN   132   135  4      
HELIX   136   144  9      
STRAND   152   156  5      
HELIX   160   170  11      
TURN   171   173  3      
STRAND   176   179  4      
STRAND   181   185  5      
HELIX   189   191  3      
HELIX   202   206  5      
HELIX   213   223  11      
TURN   224   226  3      
HELIX   230   238  9      
HELIX   240   249  10      
STRAND   256   258  3      
STRAND   268   271  4      
TURN   272   274  3      
HELIX   278   291  14      
STRAND   295   297  3      
STRAND   300   306  7      
STRAND   309   311  3      
STRAND   315   320  6      
TURN   321   323  3      
STRAND   324   329  6      
STRAND   331   335  5      
HELIX   344   350  7      
HELIX   352   354  3      
HELIX   368   375  8      
STRAND   386   393  8      
TURN   394   397  4      
HELIX   403   406  4      
STRAND   410   412  3      
HELIX   426   434  9      
STRAND   441   446  6      
HELIX   447   451  5      
HELIX   456   461  6      
STRAND   466   470  5      
HELIX   471   478  8      
HELIX   482   498  17      
STRAND   502   504  3      
STRAND   515   530  16      
STRAND   541   544  4      
TURN   545   547  3      
STRAND   548   556  9      
HELIX   558   560  3      
STRAND   563   565  3      
HELIX   573   594  22      
Sequence information
Length: 596 AA [This is the length of the unprocessed precursor] Molecular weight: 62448 Da [This is the MW of the unprocessed precursor] CRC64: 74CB81FE89790463 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MFTRKIQKTA LAMLISGAMA GTAYAAPEVL ADFHGEMGGC DSCHVSDKGG VTNDNLTHEN 

        70         80         90        100        110        120 
GQCVSCHGDL KELAAAAPKD KVSPHKSHLI GEIACTSCHK GHEKSVAYCD ACHSFGFDMP 

       130        140        150        160        170        180 
FGGKWERKFV PVDADKAAQD KAIAAGVKET TDVVIIGSGG AGLAAAVSAR DAGAKVILLE 

       190        200        210        220        230        240 
KEPIPGGNTK LAAGGMNAAE TKPQAKLGIE DKKQIMIDDT MKGGRNINDP ELVKVLANNS 

       250        260        270        280        290        300 
SDSIDWLTSM GADMTDVGRM GGASVNRSHR PTGGAGVGAH VAQVLWDNAV KRGTDIRLNS 

       310        320        330        340        350        360 
RVVRILEDAS GKVTGVLVKG EYTGYYVIKA DAVVIAAGGF AKNNERVSKY DPKLKGFKAT 

       370        380        390        400        410        420 
NHPGATGDGL DVALQAGAAT RDLEYIQAHP TYSPAGGVMI TEAVRGNGAI VVNREGNRFM 

       430        440        450        460        470        480 
NEITTRDKAS AAILQQKGES AYLVFDDSIR KSLKAIEGYV HLNIVKEGKT IEELAKQIDV 

       490        500        510        520        530        540 
PAAELAKTVT AYNGFVKSGK DAQFERPDLP RELVVAPFYA LEIAPAVHHT MGGLVIDTKA 

       550        560        570        580        590 
EVKSEKTGKP ITGLYAAGEV TGGVHGANRL GGNAISDIVT YGRIAGASAA KFAKDN 

P83223 in FASTA format

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