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UniProtKB/Swiss-Prot entry P55038


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name GLTS_SYNY3
Primary accession number P55038
Secondary accession number Q59980
Integrated into Swiss-Prot on October 1, 1996
Sequence was last modified on November 1, 1997 (Sequence version 2)
Annotations were last modified on    December 16, 2008 (Entry version 67)
Name and origin of the protein
Protein name Ferredoxin-dependent glutamate synthase 2
Synonyms EC 1.4.7.1
FD-GOGAT
Gene name
Name: gltS
OrderedLocusNames: sll1499
From
Synechocystis sp. (strain PCC 6803) [TaxID: 1148] [HAMAP proteome]
Taxonomy Bacteria; Cyanobacteria; Chroococcales; Synechocystis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1007/BF00020228; PubMed=7727752 [NCBI, ExPASy, EBI, Israel, Japan]
Navarro F., Chavez S., Candau P., Florencio F.J.;
"Existence of two ferredoxin-glutamate synthases in the cyanobacterium Synechocystis sp. PCC 6803. Isolation and insertional inactivation of gltB and gltS genes.";
Plant Mol. Biol. 27:753-767(1995).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Terauchi K., Ikeuchi M., Ohmori M.;
Submitted (DEC-1995) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1093/dnares/3.3.109; PubMed=8905231 [NCBI, ExPASy, EBI, Israel, Japan]
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.";
DNA Res. 3:109-136(1996).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X92480; CAA63218.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
D78371; BAA11379.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BA000022; BAA18693.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S76781; S76781.
RefSeq NP_442881.1; -.
3D structure databases
PDB
1LLW; X-ray; 2.70 A; A=37-1556.[ExPASy / RCSB / EBI]
1LLZ; X-ray; 3.00 A; A=37-1556.[ExPASy / RCSB / EBI]
1LM1; X-ray; 2.80 A; A=37-1556.[ExPASy / RCSB / EBI]
1OFD; X-ray; 2.00 A; A/B=37-1556.[ExPASy / RCSB / EBI]
1OFE; X-ray; 2.45 A; A/B=37-1556.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1LLW; -.
1LLZ; -.
1LM1; -.
1OFD; -.
1OFE; -.
ModBase P55038.
Protein-protein interaction databases
IntAct P55038; 4.
Enzyme and pathway databases
BioCyc SSP1148:SLL1499-MON; -.
Ontologies
GO
GO:0051538; Molecular function: 3 iron, 4 sulfur cluster binding (inferred from electronic annotation from UniProtKB-KW).
GO:0016041; Molecular function: glutamate synthase (ferredoxin) activity (inferred from electronic annotation from EC).
GO:0005506; Molecular function: iron ion binding (inferred from electronic annotation from UniProtKB-KW).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
GO:0006537; Biological process: glutamate biosynthetic process (inferred from electronic annotation from InterPro).
GO:0006541; Biological process: glutamine metabolic process (inferred from electronic annotation from UniProtKB-KW).
GO:0055114; Biological process: oxidation reduction (inferred from electronic annotation from UniProtKB-KW).
QuickGo view.
Family and domain databases
InterPro IPR013785; Aldolase_TIM.
IPR000583; GATase_2.
IPR002932; Glu_synth_centr_C.
IPR006982; Glu_synth_centr_N.
IPR002489; Glu_synthase_C.
Graphical view of domain structure.
Gene3D G3DSA:3.20.20.70; Aldolase_TIM; 2.
G3DSA:2.160.20.60; Glu_synthase_C; 1.
Pfam PF00310; GATase_2; 1.
PF04898; Glu_syn_central; 1.
PF01645; Glu_synthase; 1.
PF01493; GXGXG; 1.
Pfam graphical view of domain structure.
PROSITE PS51278; GATASE_TYPE_2; 1.
PROSITE graphical view of domain structure (profiles).
Genome annotation databases
GeneID 952019; -.
GenomeReviews BA000022_GR; sll1499.
KEGG syn:sll1499; -.
NMPDR fig|1148.1.peg.2982; -.
Phylogenomic databases
HOGENOM P55038; -.
Genome annotation databases
CMR P55038; sll1499.
Other
ProtoNet P55038.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; 3Fe-4S; Amino-acid biosynthesis; Complete proteome; FAD; Flavoprotein; FMN; Glutamate biosynthesis; Glutamine amidotransferase; Iron; Iron-sulfur; Metal-binding; Oxidoreductase.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom    To Length Description FTId
CHAIN   1   1556  1556     Ferredoxin-dependent glutamate synthase 2. PRO_0000170794
DOMAIN   37    431  395     Glutamine amidotransferase type-2. 
ACT_SITE   37     37        For GATase activity (By similarity). 
METAL   1173   1173        Iron-sulfur (3Fe-4S) (By similarity). 
METAL   1179   1179        Iron-sulfur (3Fe-4S) (By similarity). 
METAL   1184   1184        Iron-sulfur (3Fe-4S) (By similarity). 
CONFLICT   491    491        E -> Q (in Ref. 1; CAA63218). 
CONFLICT   570    572        ESA -> NPR (in Ref. 1; CAA63218). 
CONFLICT   642    650        GAILTENQS -> RRNIGLRIKV (in Ref. 1; CAA63218). 
CONFLICT   659    659        G -> E (in Ref. 1; CAA63218). 
CONFLICT   940    941        GG -> PP (in Ref. 1; CAA63218). 
CONFLICT   1059   1059        H -> L (in Ref. 1; CAA63218). 
CONFLICT   1295   1295        E -> RK (in Ref. 1; CAA63218). 
CONFLICT   1310   1310        V -> D (in Ref. 1; CAA63218). 
CONFLICT   1323   1323        A -> S (in Ref. 1; CAA63218). 
CONFLICT   1531   1531        Missing (in Ref. 1; CAA63218). 
STRAND   38     43  6      
STRAND   45     47  3      
HELIX   52     63  12      
HELIX   64     67  4      
STRAND   74     78  5      
STRAND   80     85  6      
HELIX   88     97  10      
HELIX   105    107  3      
STRAND   109    115  7      
HELIX   119    135  17      
STRAND   139    145  7      
HELIX   150    152  3      
HELIX   155    160  6      
STRAND   163    170  8      
HELIX   177    191  15      
HELIX   192    194  3      
STRAND   199    215  17      
HELIX   217    219  3      
HELIX   220    223  4      
HELIX   225    228  4      
STRAND   234    241  8      
STRAND   245    247  3      
HELIX   251    253  3      
STRAND   258    264  7      
HELIX   269    279  11      
HELIX   280    282  3      
HELIX   290    296  7      
HELIX   306    319  14      
HELIX   324    331  8      
HELIX   340    342  3      
HELIX   346    355  10      
TURN   356    358  3      
STRAND   364    371  8      
STRAND   373    380  8      
STRAND   389    393  5      
STRAND   398    403  6      
HELIX   411    413  3      
STRAND   414    419  6      
STRAND   425    429  5      
TURN   430    433  4      
STRAND   434    436  3      
HELIX   438    446  9      
HELIX   451    458  8      
STRAND   459    462  4      
HELIX   476    485  10      
HELIX   490    495  6      
HELIX   497    503  7      
TURN   518    520  3      
HELIX   527    530  4      
STRAND   531    533  3      
STRAND   538    540  3      
TURN   545    548  4      
HELIX   549    551  3      
STRAND   556    559  4      
STRAND   564    566  3      
HELIX   569    572  4      
STRAND   574    578  5      
HELIX   584    592  9      
STRAND   593    595  3      
STRAND   597    601  5      
STRAND   603    605  3      
STRAND   607    609  3      
HELIX   612    628  17      
STRAND   632    639  8      
HELIX   640    642  3      
STRAND   649    651  3      
HELIX   654    667  14      
HELIX   671    673  3      
STRAND   675    679  5      
HELIX   686    694  9      
STRAND   698    701  4      
HELIX   703    713  11      
HELIX   716    722  7      
HELIX   732    753  22      
HELIX   759    763  5      
STRAND   768    773  6      
HELIX   775    781  7      
HELIX   794    808  15      
STRAND   820    823  4      
HELIX   835    847  13      
HELIX   862    871  10      
HELIX   878    881  4      
STRAND   882    884  3      
HELIX   893    895  3      
HELIX   899    903  5      
TURN   913    915  3      
HELIX   918    931  14      
HELIX   944    947  4      
STRAND   977    981  5      
HELIX   990    995  6      
STRAND   997   1002  6      
HELIX   1017   1019  3      
HELIX   1022   1028  7      
HELIX   1048   1061  14      
STRAND   1065   1072  8      
HELIX   1077   1086  10      
STRAND   1090   1095  6      
STRAND   1102   1105  4      
HELIX   1106   1111  6      
HELIX   1116   1129  14      
HELIX   1133   1135  3      
STRAND   1137   1143  7      
HELIX   1147   1155  9      
STRAND   1159   1162  4      
HELIX   1165   1170  6      
HELIX   1179   1181  3      
STRAND   1187   1189  3      
HELIX   1193   1196  4      
HELIX   1203   1224  22      
HELIX   1229   1232  4      
HELIX   1236   1238  3      
STRAND   1239   1241  3      
STRAND   1248   1251  4      
HELIX   1256   1259  4      
HELIX   1269   1271  3      
HELIX   1283   1289  7      
HELIX   1291   1299  9      
STRAND   1302   1309  8      
HELIX   1318   1328  11      
TURN   1329   1331  3      
STRAND   1336   134