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UniProtKB/Swiss-Prot entry P51649


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name SSDH_HUMAN
Primary accession number P51649
Secondary accession numbers None
Integrated into Swiss-Prot on October 1, 1996
Sequence was last modified on May 30, 2000 (Sequence version 2)
Annotations were last modified on    December 16, 2008 (Entry version 89)
Name and origin of the protein
Protein name Succinate-semialdehyde dehydrogenase, mitochondrial [Precursor]
Synonyms EC 1.2.1.24
NAD(+)-dependent succinic semialdehyde dehydrogenase
Aldehyde dehydrogenase family 5 member A1
Gene name
Name: ALDH5A1
Synonyms: SSADH
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Lymphocyte;
DOI=10.1086/301964; PubMed=9683595 [NCBI, ExPASy, EBI, Israel, Japan]
Chambliss K.L., Hinson D.D., Trettel F., Malaspina P., Novelletto A., Jakobs C., Gibson K.M.;
"Two exon-skipping mutations as the molecular basis of succinic semialdehyde dehydrogenase deficiency (4-hydroxybutyric aciduria).";
Am. J. Hum. Genet. 63:399-408(1998).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
DOI=10.1038/nature02055; PubMed=14574404 [NCBI, ExPASy, EBI, Israel, Japan]
Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D., Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.;
"The DNA sequence and analysis of human chromosome 6.";
Nature 425:805-811(2003).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Testis;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
NUCLEOTIDE SEQUENCE [MRNA] OF 213-535.
TISSUE=Liver;
DOI=10.1074/jbc.270.1.461; PubMed=7814412 [NCBI, ExPASy, EBI, Israel, Japan]
Chambliss K.L., Caudle D.L., Hinson D.D., Moomaw C.R., Slaughter C.A., Jakobs C., Gibson K.M.;
"Molecular cloning of the mature NAD(+)-dependent succinic semialdehyde dehydrogenase from rat and human. cDNA isolation, evolutionary homology, and tissue expression.";
J. Biol. Chem. 270:461-467(1995).
[5]
SUBUNIT.
TISSUE=Brain;
PubMed=9059628 [NCBI, ExPASy, EBI, Israel, Japan]
Trettel F., Malaspina P., Jodice C., Novelletto A., Slaughter C.A., Caudle D.L., Hinson D.D., Chambliss K.L., Gibson K.M.;
"Human succinic semialdehyde dehydrogenase. Molecular cloning and chromosomal localization.";
Adv. Exp. Med. Biol. 414:253-260(1997).
[6]
VARIANTS SSADH DEFICIENCY GLU-268 AND ASP-409.
DOI=10.1006/mgme.2000.3145; PubMed=11243727 [NCBI, ExPASy, EBI, Israel, Japan]
Hogema B.M., Akaboshi S., Taylor M., Salomons G.S., Jakobs C., Schutgens R.B., Wilcken B., Worthington S., Maropoulos G., Grompe M., Gibson K.M.;
"Prenatal diagnosis of succinic semialdehyde dehydrogenase deficiency: increased accuracy employing DNA, enzyme, and metabolite analyses.";
Mol. Genet. Metab. 72:218-222(2001).
[7]
VARIANT SSADH DEFICIENCY GLU-487.
DOI=10.1159/000048603; PubMed=11901270 [NCBI, ExPASy, EBI, Israel, Japan]
Aoshima T., Kajita M., Sekido Y., Ishiguro Y., Tsuge I., Kimura M., Yamaguchi S., Watanabe K., Shimokata K., Niwa T.;
"Mutation analysis in a patient with succinic semialdehyde dehydrogenase deficiency: a compound heterozygote with 103-121del and 1460T>A of the ALDH5A1 gene.";
Hum. Hered. 53:42-44(2002).
[8]
VARIANTS SSADH DEFICIENCY PHE-93; ARG-176; TYR-223; MET-233; SER-255; GLU-268; LYS-335; GLN-382; LEU-382; ASP-409 AND ARG-533, VARIANTS ARG-36; TYR-180; LEU-182; SER-237 AND ILE-406, AND CHARACTERIZATION OF VARIANTS ARG-36; PHE-93; ARG-176; TYR-180; LEU-182; TYR-223; MET-233; SER-237; SER-255; GLU-268; LYS-335; LEU-382; ASP-409 AND ARG-533.
DOI=10.1002/humu.10288; PubMed=14635103 [NCBI, ExPASy, EBI, Israel, Japan]
Akaboshi S., Hogema B.M., Novelletto A., Malaspina P., Salomons G.S., Maropoulos G.D., Jakobs C., Grompe M., Gibson K.M.;
"Mutational spectrum of the succinate semialdehyde dehydrogenase (ALDH5A1) gene and functional analysis of 27 novel disease-causing mutations in patients with SSADH deficiency.";
Hum. Mutat. 22:442-450(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
Y11192; CAA72076.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AL031230; CAA20248.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC034321; AAH34321.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
L34820; AAA67057.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A55773; A55773.
RefSeq NP_001071.1; -.
UniGene Hs.371723
3D structure databases
HSSP Q28399; 1O9J. [HSSP ENTRY / PDB]
ModBase P51649.
PTM databases
PhosphoSite P51649; -.
Enzyme and pathway databases
BioCyc MetaCyc:MON-11540; -.
Organism-specific databases
GeneCards GC06P024603; -.
H-InvDB HIX0005623; -.
HGNC HGNC:408; ALDH5A1.
GenAtlas ALDH5A1.
MIM 271980; phenotype. [NCBI / EBI]
610045; gene. [NCBI / EBI]
Orphanet 22; 4-hydroxybutyricaciduria.
PharmGKB PA24702; -.
GeneCards P51649.
Gene expression databases
ArrayExpress P51649; -.
CleanEx HS_ALDH5A1; -.
GermOnline ENSG00000112294; Homo sapiens.
Ontologies
GO
GO:0005739; Cellular component: mitochondrion (inferred from sequence or structural similarity from UniProtKB).
GO:0005625; Cellular component: soluble fraction (inferred from direct assay from UniProtKB).
GO:0042803; Molecular function: protein homodimerization activity (inferred by curator from UniProtKB).
GO:0004777; Molecular function: succinate-semialdehyde dehydrogenase activity (inferred from direct assay from UniProtKB).
GO:0006083; Biological process: acetate metabolic process (inferred from sequence or structural similarity from UniProtKB).
GO:0007417; Biological process: central nervous system development (inferred from mutant phenotype from UniProtKB).
GO:0006681; Biological process: galactosylceramide metabolic process (inferred from sequence or structural similarity from UniProtKB).
GO:0009450; Biological process: gamma-aminobutyric acid catabolic process (inferred from direct assay from UniProtKB).
GO:0006006; Biological process: glucose metabolic process (inferred from sequence or structural similarity from UniProtKB).
GO:0006536; Biological process: glutamate metabolic process (inferred from sequence or structural similarity from UniProtKB).
GO:0006541; Biological process: glutamine metabolic process (inferred from sequence or structural similarity from UniProtKB).
GO:0006749; Biological process: glutathione metabolic process (inferred from sequence or structural similarity from UniProtKB).
GO:0006650; Biological process: glycerophospholipid metabolic process (inferred from sequence or structural similarity from UniProtKB).
GO:0042135; Biological process: neurotransmitter catabolic process (inferred from sequence or structural similarity from UniProtKB).
GO:0051289; Biological process: protein homotetramerization (inferred from direct assay from UniProtKB).
GO:0022904; Biological process: respiratory electron transport chain (inferred from sequence or structural similarity from UniProtKB).
GO:0006105; Biological process: succinate metabolic process (inferred from sequence or structural similarity from UniProtKB).
QuickGo view.
Family and domain databases
InterPro IPR016160; Ald_DHase_CS.
IPR016162; Ald_DHase_N.
IPR015590; Aldehyde_DHase.
IPR010102; Succ_semiAld_DHase.
Graphical view of domain structure.
Gene3D G3DSA:3.40.605.10; Aldehyde_dehydrogenase_N; 1.
PANTHER PTHR11699; Aldehyde_dehyd; 1.
Pfam PF00171; Aldedh; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR01780; SSADH; 1.
PROSITE PS00070; ALDEHYDE_DEHYDR_CYS; 1.
PS00687; ALDEHYDE_DEHYDR_GLU; 1.
Proteomics databases
PRIDE P51649; -.
Genome annotation databases
Ensembl ENSG00000112294; Homo sapiens. [Contig view]
GeneID 7915; -.
KEGG hsa:7915; -.
Phylogenomic databases
HOVERGEN P51649; -.
Other
DrugBank DB00534; Chlormerodrin.
DB00157; NADH.
DB00139; Succinic acid.
NextBio 30381; -.
SOURCE ALDH5A1; Homo sapiens.
ProtoNet P51649.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Disease mutation; Mitochondrion; NAD; Oxidoreductase; Polymorphism; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    47  47     Mitochondrion (Potential). 
CHAIN   48   535  488     Succinate-semialdehyde dehydrogenase, mitochondrial. PRO_0000007184
NP_BIND   284   289  6     NADP (By similarity). 
ACT_SITE   306   306        Proton acceptor (By similarity). 
ACT_SITE   340   340        Nucleophile (By similarity). 
SITE   205   205  1     Transition state stabilizer (By similarity). 
VARIANT   36    36  1     G -> R (87% of activity). VAR_026227 
VARIANT   93    93  1     C -> F (in SSADH deficiency; 3% of activity). VAR_026199 
VARIANT   176   176  1     G -> R (in SSADH deficiency; <1% of activity). VAR_026200 
VARIANT   180   180  1     H -> Y (83% of activity; dbSNP:rs2760118 [NCBI]). VAR_016758 
VARIANT   182   182  1     P -> L (48% of activity; dbSNP:rs3765310 [NCBI]). VAR_016759 
VARIANT   223   223  1     C -> Y (in SSADH deficiency; 5% of activity). VAR_026201 
VARIANT   233   233  1     T -> M (in SSADH deficiency; 4% of activity). VAR_026202 
VARIANT   237   237  1     A -> S (65% of activity). VAR_026228 
VARIANT   255   255  1     N -> S (in SSADH deficiency; 17% of activity). VAR_026203 
VARIANT   268   268  1     G -> E (in SSADH deficiency; <1% of activity). VAR_026204 
VARIANT   335   335  1     N -> K (in SSADH deficiency; 1% of activity). VAR_026205 
VARIANT   382   382  1     P -> L (in SSADH deficiency; 2% of activity). VAR_026206 
VARIANT   382   382  1     P -> Q (in SSADH deficiency). VAR_026207 
VARIANT   406   406  1     V -> I. VAR_026229 
VARIANT   409   409  1     G -> D (in SSADH deficiency; <1% of activity). VAR_026208 
VARIANT   487   487  1     V -> E (in SSADH deficiency). VAR_026209 
VARIANT   533   533  1     G -> R (in SSADH deficiency; <1% of activity). VAR_026210 
Sequence information
Length: 535 AA [This is the length of the unprocessed precursor] Molecular weight: 57215 Da [This is the MW of the unprocessed precursor] CRC64: C63A9431D3FA16C7 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MATCIWLRSC GARRLGSTFP GCRLRPRAGG LVPASGPAPG PAQLRCYAGR LAGLSAALLR 

        70         80         90        100        110        120 
TDSFVGGRWL PAAATFPVQD PASGAALGMV ADCGVREARA AVRAAYEAFC RWREVSAKER 

       130        140        150        160        170        180 
SSLLRKWYNL MIQNKDDLAR IITAESGKPL KEAHGEILYS AFFLEWFSEE ARRVYGDIIH 

       190        200        210        220        230        240 
TPAKDRRALV LKQPIGVAAV ITPWNFPSAM ITRKVGAALA AGCTVVVKPA EDTPFSALAL 

       250        260        270        280        290        300 
AELASQAGIP SGVYNVIPCS RKNAKEVGEA ICTDPLVSKI SFTGSTTTGK ILLHHAANSV 

       310        320        330        340        350        360 
KRVSMELGGL APFIVFDSAN VDQAVAGAMA SKFRNTGQTC VCSNQFLVQR GIHDAFVKAF 

       370        380        390        400        410        420 
AEAMKKNLRV GNGFEEGTTQ GPLINEKAVE KVEKQVNDAV SKGATVVTGG KRHQLGKNFF 

       430        440        450        460        470        480 
EPTLLCNVTQ DMLCTHEETF GPLAPVIKFD TEEEAIAIAN AADVGLAGYF YSQDPAQIWR 

       490        500        510        520        530 
VAEQLEVGMV GVNEGLISSV ECPFGGVKQS GLGREGSKYG IDEYLELKYV CYGGL 

P51649 in FASTA format

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View entry in raw text format (no links)
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