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UniProtKB/Swiss-Prot entry P49200


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name RS201_ARATH
Primary accession number P49200
Secondary accession numbers Q42168 Q9FPI1 Q9LDG8
Integrated into Swiss-Prot on February 1, 1996
Sequence was last modified on June 20, 2002 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 66)
Name and origin of the protein
Protein name 40S ribosomal protein S20-1
Synonyms None
Gene names
Name: RPS20A
OrderedLocusNames: At3g45030
ORFNames: F14D17_100
and
Name: RPS20C
OrderedLocusNames: At5g62300
ORFNames: MMI9.13, MMI9_120
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT3G45030).
STRAIN=cv. Columbia;
DOI=10.1038/35048706; PubMed=11130713 [NCBI, ExPASy, EBI, Israel, Japan]
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
Nature 408:820-822(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT5G62300).
STRAIN=cv. Columbia;
DOI=10.1093/dnares/7.1.31; PubMed=10718197 [NCBI, ExPASy, EBI, Israel, Japan]
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones.";
DNA Res. 7:31-63(2000).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT3G45030 AND AT5G62300).
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (AT5G62300).
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
TISSUE=Dry seed, and Seedling;
DOI=10.1046/j.1365-313X.1996.09010101.x; PubMed=8580968 [NCBI, ExPASy, EBI, Israel, Japan]
Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C., Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R., Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J., Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D., Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P., Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H.;
"Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs.";
Plant J. 9:101-124(1996).
[6]
GENE FAMILY ORGANIZATION, AND NOMENCLATURE.
DOI=10.1104/pp.127.2.398; PubMed=11598216 [NCBI, ExPASy, EBI, Israel, Japan]
Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J.;
"The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome.";
Plant Physiol. 127:398-415(2001).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
AL353992; CAB89318.1; ALT_INIT; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB019235; BAA97194.1; ALT_INIT; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF325017; AAG40369.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF370460; AAK43837.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY096646; AAM20143.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY114024; AAM45072.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY085673; AAM62892.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Z27060; CAA81578.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Z26188; CAA81186.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Z26558; CAA81329.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_001078781.1; -.
NP_190089.2; -.
NP_201036.1; -.
UniGene At.1758
3D structure databases
ModBase P49200.
Organism-specific databases
GeneFarm 916; 71.
926; 71.
TAIR At3g45030; -.
At5g62300; -.
Gene expression databases
ArrayExpress P49200; -.
GermOnline AT3G45030; Arabidopsis thaliana.
Family and domain databases
InterPro IPR001848; Ribosomal_S10.
IPR005729; Ribosomal_S10_euk/arc.
Graphical view of domain structure.
Gene3D G3DSA:3.30.70.600; Ribosomal_S10; 1.
PANTHER PTHR11700; Ribosomal_S10; 1.
Pfam PF00338; Ribosomal_S10; 1.
Pfam graphical view of domain structure.
PRINTS PR00971; RIBOSOMALS10.
ProDom PD001272; Ribosomal_S10; 1.
[Domain structure / List of seq. sharing at least 1 domain]
TIGRFAMs TIGR01046; S10_Arc_S20_Euk; 1.
PROSITE PS00361; RIBOSOMAL_S10; 1.
BLOCKS P49200.
Proteomic databases
ProMEX P49200; -.
Genome annotation databases
GeneID 823638; -.
836351; -.
GenomeReviews BA000014_GR; AT3G45030.
BA000015_GR; AT5G62300.
KEGG ath:AT3G45030; -.
ath:AT5G62300; -.
Other
ProtoNet P49200.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Ribonucleoprotein; Ribosomal protein.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   124  124     40S ribosomal protein S20-1. PRO_0000146688
CONFLICT   25    25        I -> L (in Ref. 5; CAA81578). 
CONFLICT   31    31        S -> P (in Ref. 5; CAA81329). 
CONFLICT   35    35        K -> N (in Ref. 5; CAA81186). 
CONFLICT   36    36        N -> I (in Ref. 5; CAA81578). 
CONFLICT   45    45        V -> A (in Ref. 5; CAA81578). 
CONFLICT   56    56        K -> M (in Ref. 5; CAA81578). 
CONFLICT   77    77        E -> D (in Ref. 5; CAA81578). 
CONFLICT   97   108        FSSPDVVKQITS -> SALLMWSTRSV (in Ref. 5; CAA81186). 
CONFLICT   97    97        F -> H (in Ref. 5; CAA81578). 
CONFLICT   108   108        S -> P (in Ref. 5; CAA81578). 
CONFLICT   124   124        S -> A (in Ref. 5; CAA81578). 
Sequence information
Length: 124 AA [This is the length of the unprocessed precursor] Molecular weight: 13878 Da [This is the MW of the unprocessed precursor] CRC64: CBAA848100E1BFD2 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MATAYQPMKP GKAGLEEPLE QIHKIRITLS SKNVKNLEKV CTDLVRGAKD KRLRVKGPVR 

        70         80         90        100        110        120 
MPTKVLKITT RKAPCGEGTN TWDRFELRVH KRVIDLFSSP DVVKQITSIT IEPGVEVEVT 


IADS 

P49200 in FASTA format

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View entry in raw text format (no links)
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