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UniProtKB/Swiss-Prot entry P38758


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name YHG9_YEAST
Primary accession number P38758
Secondary accession numbers None
Integrated into Swiss-Prot on February 1, 1995
Sequence was last modified on May 16, 2006 (Sequence version 2)
Annotations were last modified on    December 16, 2008 (Entry version 56)
Name and origin of the protein
Protein name UPF0673 membrane protein YHR009C
Synonyms None
Gene name
OrderedLocusNames: YHR009C
From
Saccharomyces cerevisiae (Baker's yeast) [TaxID: 4932] 
Taxonomy Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204511 / S288c / AB972;
PubMed=8091229 [NCBI, ExPASy, EBI, Israel, Japan]
Johnston M., Andrews S., Brinkman R., Cooper J., Ding H., Dover J., Du Z., Favello A., Fulton L., Gattung S., Geisel C., Kirsten J., Kucaba T., Hillier L.W., Jier M., Johnston L., Langston Y., Latreille P., Louis E.J., Macri C., Mardis E., Menezes S., Mouser L., Nhan M., Rifkin L., Riles L., St Peter H., Trevaskis E., Vaughan K., Vignati D., Wilcox L., Wohldman P., Waterston R., Wilson R., Vaudin M.;
"Complete nucleotide sequence of Saccharomyces cerevisiae chromosome VIII.";
Science 265:2077-2082(1994).
[2]
SUBCELLULAR LOCATION, AND IDENTIFICATION BY MASS SPECTROMETRY.
DOI=10.1083/jcb.148.4.635; PubMed=10684247 [NCBI, ExPASy, EBI, Israel, Japan]
Rout M.P., Aitchison J.D., Suprapto A., Hjertaas K., Zhao Y., Chait B.T.;
"The yeast nuclear pore complex: composition, architecture, and transport mechanism.";
J. Cell Biol. 148:635-651(2000).
[3]
IDENTIFICATION OF PROBABLE INITIATION SITE.
DOI=10.1038/nature01644; PubMed=12748633 [NCBI, ExPASy, EBI, Israel, Japan]
Kellis M., Patterson N., Endrizzi M., Birren B.W., Lander E.S.;
"Sequencing and comparison of yeast species to identify genes and regulatory elements.";
Nature 423:241-254(2003).
[4]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
DOI=10.1038/nature02026; PubMed=14562095 [NCBI, ExPASy, EBI, Israel, Japan]
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W., Weissman J.S., O'Shea E.K.;
"Global analysis of protein localization in budding yeast.";
Nature 425:686-691(2003).
[5]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
DOI=10.1038/nature02046; PubMed=14562106 [NCBI, ExPASy, EBI, Israel, Japan]
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[6]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-306, AND MASS SPECTROMETRY.
DOI=10.1073/pnas.0607084104; PubMed=17287358 [NCBI, ExPASy, EBI, Israel, Japan]
Chi A., Huttenhower C., Geer L.Y., Coon J.J., Syka J.E.P., Bai D.L., Shabanowitz J., Burke D.J., Troyanskaya O.G., Hunt D.F.;
"Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry.";
Proc. Natl. Acad. Sci. U.S.A. 104:2193-2198(2007).
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-200; THR-202; SER-204; SER-206 AND SER-212, AND MASS SPECTROMETRY.
DOI=10.1073/pnas.0701622104; PubMed=17563356 [NCBI, ExPASy, EBI, Israel, Japan]
Smolka M.B., Albuquerque C.P., Chen S.H., Zhou H.;
"Proteome-wide identification of in vivo targets of DNA damage checkpoint kinases.";
Proc. Natl. Acad. Sci. U.S.A. 104:10364-10369(2007).
[8]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-158; SER-159; SER-184; SER-200; THR-202; SER-204; SER-206; SER-210 AND SER-212, AND MASS SPECTROMETRY.
DOI=10.1074/mcp.M700468-MCP200; PubMed=18407956 [NCBI, ExPASy, EBI, Israel, Japan]
Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.;
"A multidimensional chromatography technology for in-depth phosphoproteome analysis.";
Mol. Cell. Proteomics 7:1389-1396(2008).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U10400; AAB68938.1; ALT_INIT; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S46784; S46784.
RefSeq NP_011873.1; -.
3D structure databases
ModBase P38758.
Protein-protein interaction databases
DIP DIP:4617N; -.
IntAct P38758; 13.
Organism-specific databases
CYGD YHR009c; -.
SGD S000001051; YHR009C.
Yeast-GFP YHR009C.
Gene expression databases
ArrayExpress P38758; -.
GermOnline YHR009C; Saccharomyces cerevisiae.
Ontologies
GO
GO:0005737; Cellular component: cytoplasm (inferred from electronic annotation from UniProtKB-KW).
GO:0016020; Cellular component: membrane (inferred from electronic annotation from UniProtKB-SubCell).
GO:0016491; Molecular function: oxidoreductase activity (inferred from electronic annotation from InterPro).
GO:0005515; Molecular function: protein binding (inferred from physical interaction from IntAct).
QuickGo view.
Family and domain databases
InterPro IPR006076; FAD-dep_OxRdtase.
Graphical view of domain structure.
Pfam PF01266; DAO; 1.
Pfam graphical view of domain structure.
Proteomic databases
PeptideAtlas P38758; -.
Genome annotation databases
Ensembl YHR009C; Saccharomyces cerevisiae. [Contig view]
GeneID 856400; -.
GenomeReviews U00093_GR; YHR009C.
KEGG sce:YHR009C; -.
NMPDR fig|4932.3.peg.3018; -.
Phylogenomic databases
HOGENOM P38758; -.
Other
LinkHub P38758; -.
NextBio 981931; -.
ProtoNet P38758.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Complete proteome; Membrane; Phosphoprotein; Transmembrane.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   523  523     UPF0673 membrane protein YHR009C. PRO_0000202886
TRANSMEM   24    40  17     Potential. 
COMPBIAS   156   212  57     Ser-rich. 
MOD_RES   158   158        Phosphoserine. 
MOD_RES   159   159        Phosphoserine. 
MOD_RES   184   184        Phosphoserine. 
MOD_RES   200   200        Phosphoserine. 
MOD_RES   202   202        Phosphothreonine. 
MOD_RES   204   204        Phosphoserine. 
MOD_RES   206   206        Phosphoserine. 
MOD_RES   210   210        Phosphoserine. 
MOD_RES   212   212        Phosphoserine. 
MOD_RES   306   306        Phosphoserine. 
Sequence information
Length: 523 AA [This is the length of the unprocessed precursor] Molecular weight: 57614 Da [This is the MW of the unprocessed precursor] CRC64: 7D02A4C731758B6D [This is a checksum on the sequence]
        10         20         30         40         50         60 
MGEDFMHPPF QTYPSKNSEG KKHIVIVGGG IIGCCTAYYL TQHPSFSPST HHITIIESRR 

        70         80         90        100        110        120 
IAGGASGKAG GLLASWAFPH QIVPLSFQLH QELSDEYDGE NNWDYRRLTT VSLEADVREE 

       130        140        150        160        170        180 
VIENYERLSK KAYNLNVPPP KKRPGYISNK FNIGDSNSSL SSSGSSLKND SASNEEEGSD 

       190        200        210        220        230        240 
IHVSSSVPSL HSLTNERMRS HTNSASDLDS VSPVEQLRET NIHNPLPADL DWIRRELVND 

       250        260        270        280        290        300 
WSSLGGTDTT AQLHPYKFTH FILSKAMETG AVDLLLGKVV GLKCDEMDCV HSLKYLPSVV 

       310        320        330        340        350        360 
KNRRNSRGHA ENPDIKLGTI FNDENAKPIE INDIQQIVLS MGPWTSKILK DCPISGLRAH 

       370        380        390        400        410        420 
SVTIKPSEKT VSPYAILAEL KVNDREFFSP EMYARKDEVY VCGEGDTLVN IPESSDDVEV 

       430        440        450        460        470        480 
VSEKCDELYH YVSKLSPTLS KGHLLRKQAC FLPVLNVPTS SGPLIGETNV KDLYIASGHS 

       490        500        510        520 
CWGINNAPAT GKLMAEILLD GEATSAEISS LDPKLYFDAT ILS 

P38758 in FASTA format

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View entry in raw text format (no links)
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BLAST logo BLAST submission on ExPASy/SIB
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Tools Sequence analysis tools: ProtParam, ProtScale, Compute pI/Mw, PeptideMass, PeptideCutter, Dotlet (Java)
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