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UniProtKB/Swiss-Prot entry P27485


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name RET4_PIG
Primary accession number P27485
Secondary accession numbers None
Integrated into Swiss-Prot on August 1, 1992
Sequence was last modified on July 15, 1998 (Sequence version 2)
Annotations were last modified on    November 25, 2008 (Entry version 66)
Name and origin of the protein
Protein name Retinol-binding protein 4 [Precursor]
Synonyms Plasma retinol-binding protein
PRBP
RBP
Gene name
Name: RBP4
From
Sus scrofa (Pig) [TaxID: 9823] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=1723146 [NCBI, ExPASy, EBI, Israel, Japan]
Trout W.E., McDonnell J.J., Kramer K.K., Baumbach G.A., Roberts R.M.;
"The retinol-binding protein of the expanding pig blastocyst: molecular cloning and expression in trophectoderm and embryonic disc.";
Mol. Endocrinol. 5:1533-1540(1991).
[2]
PROTEIN SEQUENCE OF 19-51, AND DEVELOPMENTAL STAGE.
PubMed=2340335 [NCBI, ExPASy, EBI, Israel, Japan]
Harney J.P., Mirando M.A., Smith L.C., Bazer F.W.;
"Retinol-binding protein: a major secretory product of the pig conceptus.";
Biol. Reprod. 42:523-532(1990).
[3]
X-RAY CRYSTALLOGRAPHY (1.65 ANGSTROMS), AND SEQUENCE REVISION TO 134 AND 185.
DOI=10.1107/S0907444998002303; PubMed=9757135 [NCBI, ExPASy, EBI, Israel, Japan]
Zanotti G., Panzalorto M., Marcato A., Malpeli G., Folli C., Berni R.;
"Structure of pig plasma retinol-binding protein at 1.65-A resolution.";
Acta Crystallogr. D 54:1049-1052(1998).
Comments
  • FUNCTION: Delivers retinol from the liver stores to the peripheral tissues. In plasma, the RBP-retinol complex interacts with transthyretin, this prevents its loss by filtration through the kidney glomeruli.
  • SUBCELLULAR LOCATION: Secreted.
  • DEVELOPMENTAL STAGE: Produced between days 10 and 15 of pregnancy and at day 15 found in both the peri-implantation conceptus (trophectoderm and yolk sac) and the endometrial surface and glandular epithelium. Found in allantoic fluid at day 30 of gestation.
  • SIMILARITY: Belongs to the calycin superfamily. Lipocalin family.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M68860; AAA31113.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A39486; A39486.
RefSeq NP_999222.1; -.
UniGene Ssc.15695
3D structure databases
PDB
1AQB; X-ray; 1.65 A; A=19-201.[ExPASy / RCSB / EBI]
PDBsum 1AQB; -.
ModBase P27485.
Ontologies
GO
GO:0005576; Cellular component: extracellular region (inferred from electronic annotation from UniProtKB-KW).
GO:0016918; Molecular function: retinal binding (inferred from electronic annotation from UniProtKB-KW).
GO:0019841; Molecular function: retinol binding (inferred from electronic annotation from UniProtKB-KW).
GO:0005215; Molecular function: transporter activity (inferred from electronic annotation from InterPro).
GO:0006810; Biological process: transport (inferred from electronic annotation from InterPro).
QuickGo view.
Family and domain databases
InterPro IPR012674; Calycin.
IPR002345; Lipocalin.
IPR000566; Lipocln_cytFABP.
IPR002449; Retinol_bd.
Graphical view of domain structure.
Gene3D G3DSA:2.40.128.20; Calycin; 1.
PANTHER PTHR11873; Retinol_bd; 1.
Pfam PF00061; Lipocalin; 1.
Pfam graphical view of domain structure.
PRINTS PR00179; LIPOCALIN.
PR01174; RETINOLBNDNG.
PROSITE PS00213; LIPOCALIN; 1.
Genome annotation databases
GeneID 397124; -.
KEGG ssc:397124; -.
Phylogenomic databases
HOVERGEN P27485; -.
Other
LinkHub P27485; -.
ProtoNet P27485.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Direct protein sequencing; Retinol-binding; Secreted; Signal; Transport; Vitamin A.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
SIGNAL   1    18  18      
CHAIN   19   201  183     Retinol-binding protein 4. PRO_0000017968
DISULFID   22   178         
DISULFID   88   192         
DISULFID   138   147         
CONFLICT   134   134        V -> A (in Ref. 1; AAA31113). 
CONFLICT   185   185        I -> L (in Ref. 1; AAA31113). 
HELIX   24    26  3      
HELIX   35    38  4      
STRAND   40    48  9      
STRAND   51    53  3      
STRAND   55    65  11      
STRAND   71    80  10      
STRAND   86    97  12      
STRAND   103   112  10      
STRAND   118   127  10      
STRAND   129   141  13      
STRAND   145   158  14      
HELIX   164   176  13      
Sequence information
Length: 201 AA [This is the length of the unprocessed precursor] Molecular weight: 23067 Da [This is the MW of the unprocessed precursor] CRC64: A20E39D3C9471DC8 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MEWVWALVLL AALGSAQAER DCRVSSFRVK ENFDKARFSG TWYAMAKKDP EGLFLQDNIV 

        70         80         90        100        110        120 
AEFSVDENGH MSATAKGRVR LLNNWDVCAD MVGTFTDTED PAKFKMKYWG VASFLQKGND 

       130        140        150        160        170        180 
DHWIIDTDYD TYAVQYSCRL QNLDGTCADS YSFVFARDPH GFSPEVQKIV RQRQEELCLA 

       190        200 
RQYRIITHNG YCDGKSERNI L 

P27485 in FASTA format

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