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UniProtKB/Swiss-Prot entry P25857


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name G3PB_ARATH
Primary accession number P25857
Secondary accession number Q9C7S2
Integrated into Swiss-Prot on May 1, 1992
Sequence was last modified on May 2, 2002 (Sequence version 2)
Annotations were last modified on    September 2, 2008 (Entry version 83)
Name and origin of the protein
Protein name Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic [Precursor]
Synonyms EC 1.2.1.13
NADP-dependent glyceraldehydephosphate dehydrogenase subunit B
Gene name
Name: GAPB
OrderedLocusNames: At1g42970
ORFNames: F13A11.3
From
Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
TISSUE=Leaf;
DOI=10.1016/0378-1119(91)90242-4; PubMed=1916285 [NCBI, ExPASy, EBI, Israel, Japan]
Shih M.-C., Heinrich P., Goodman H.M.;
"Cloning and chromosomal mapping of nuclear genes encoding chloroplast and cytosolic glyceraldehyde-3-phosphate-dehydrogenase from Arabidopsis thaliana.";
Gene 104:133-138(1991).
[2]
ERRATUM.
DOI=10.1016/0378-1119(92)90290-6; PubMed=1398114 [NCBI, ExPASy, EBI, Israel, Japan]
Shih M.-C., Heinrich P., Goodman H.M.;
Gene 119:317-319(1992).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
DOI=10.1038/35048500; PubMed=11130712 [NCBI, ExPASy, EBI, Israel, Japan]
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
Nature 408:816-820(2000).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
DOI=10.1126/science.1088305; PubMed=14593172 [NCBI, ExPASy, EBI, Israel, Japan]
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis genome.";
Science 302:842-846(2003).
[5]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS], AND MASS SPECTROMETRY.
DOI=10.1074/mcp.M300030-MCP200; PubMed=12766230 [NCBI, ExPASy, EBI, Israel, Japan]
Ferro M., Salvi D., Brugiere S., Miras S., Kowalski S., Louwagie M., Garin J., Joyard J., Rolland N.;
"Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana.";
Mol. Cell. Proteomics 2:325-345(2003).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M64115; AAD10210.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
M64118; AAA32795.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AC068324; AAG51517.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY039961; AAK64065.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY039539; AAK62594.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY079402; AAL85133.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY095991; AAM19948.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY140091; AAM98232.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BT002267; AAN72278.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR C96497; C96497.
JQ1286; JQ1286.
RefSeq NP_174996.1; -.
UniGene At.21749
3D structure databases
HSSP P19866; 1NBO. [HSSP ENTRY / PDB]
SMR P25857; 81-418.
ModBase P25857.
2D gel databases
SWISS-2DPAGE P25857; -.
Organism-specific databases
TAIR At1g42970; -.
Gene expression databases
ArrayExpress P25857; -.
GermOnline AT1G42970; Arabidopsis thaliana.
Family and domain databases
InterPro IPR000173; GlycerAld_3-P_DHase.
IPR006424; Glyceraldehyde-3-P_DHase_1.
Graphical view of domain structure.
PANTHER PTHR10836; GAP_DH; 1.
Pfam PF02800; Gp_dh_C; 1.
PF00044; Gp_dh_N; 1.
Pfam graphical view of domain structure.
PRINTS PR00078; G3PDHDRGNASE.
TIGRFAMs TIGR01534; GAPDH-I; 1.
PROSITE PS00071; GAPDH; 1.
BLOCKS P25857.
Proteomic databases
ProMEX P25857; -.
Genome annotation databases
GeneID 840895; -.
GenomeReviews CT485782_GR; AT1G42970.
KEGG ath:AT1G42970; -.
Other
ProtoNet P25857.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Calvin cycle; Chloroplast; Complete proteome; Membrane; NADP; Oxidoreductase; Plastid; Transit peptide.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
TRANSIT   1    80  80     Chloroplast (By similarity). 
CHAIN   81   447  367     Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic. PRO_0000010417
NP_BIND   91    92  2     NADP (By similarity). 
REGION   234   236  3     Glyceraldehyde 3-phosphate binding (By similarity). 
REGION   293   294  2     Glyceraldehyde 3-phosphate binding (By similarity). 
ACT_SITE   235   235        Nucleophile (By similarity). 
BINDING   115   115        NADP (By similarity). 
BINDING   160   160        NADP; via carbonyl oxygen (By similarity). 
BINDING   265   265        Glyceraldehyde 3-phosphate (By similarity). 
BINDING   280   280        Glyceraldehyde 3-phosphate (By similarity). 
BINDING   316   316        Glyceraldehyde 3-phosphate (By similarity). 
BINDING   399   399        NADP (By similarity). 
SITE   262   262  1     Activates thiol group during catalysis (By similarity). 
Sequence information
Length: 447 AA [This is the length of the unprocessed precursor] Molecular weight: 47660 Da [This is the MW of the unprocessed precursor] CRC64: E7DBD59915560EF3 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA 

        70         80         90        100        110        120 
AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW HGRKDSPLEV VVLNDSGGVK 

       130        140        150        160        170        180 
NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG 

       190        200        210        220        230        240 
VFVDGPGAGK HIQAGASKVI ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL 

       250        260        270        280        290        300 
APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS 

       310        320        330        340        350        360 
LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC 

       370        380        390        400        410        420 
DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE WGYSQRVVDL AHLVASKWPG 

       430        440 
AEAVGSGDPL EDFCKTNPAD EECKVYD 

P25857 in FASTA format

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