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UniProtKB/Swiss-Prot entry P24095


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name LOXX_SOYBN
Primary accession number P24095
Secondary accession numbers None
Integrated into Swiss-Prot on March 1, 1992
Sequence was last modified on March 1, 1992 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 70)
Name and origin of the protein
Protein name Seed lipoxygenase
Synonym EC 1.13.11.12
Gene name
Name: LOX1.4
Synonyms: SC514
From
Glycine max (Soybean) [TaxID: 3847] 
Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids I; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
TISSUE=Cotyledon;
DOI=10.1007/BF00020569; PubMed=1909908 [NCBI, ExPASy, EBI, Israel, Japan]
Shibata D., Kato T., Tanaka K.;
"Nucleotide sequences of a soybean lipoxygenase gene and the short intergenic region between an upstream lipoxygenase gene.";
Plant Mol. Biol. 16:353-359(1991).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Williams 82;
TISSUE=Radicle;
Park T., Holland M.A., Laskey J.G., Polacco J.C.;
Submitted (DEC-1993) to the EMBL/GenBank/DDBJ databases.
[3]
X-RAY CRYSTALLOGRAPHY (2.4 ANGSTROMS) IN COMPLEX WITH IRON IONS.
DOI=10.1002/prot.21182; PubMed=17022084 [NCBI, ExPASy, EBI, Israel, Japan]
Youn B., Sellhorn G.E., Mirchel R.J., Gaffney B.J., Grimes H.D., Kang C.;
"Crystal structures of vegetative soybean lipoxygenase VLX-B and VLX-D, and comparisons with seed isoforms LOX-1 and LOX-3.";
Proteins 65:1008-1020(2006).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X56139; CAA39604.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U04526; AAA03728.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR S13381; S13381.
UniGene Gma.11166
3D structure databases
PDB
2IUK; X-ray; 2.40 A; A/B=1-864.[ExPASy / RCSB / EBI]
PDBsum 2IUK; -.
ModBase P24095.
Family and domain databases
InterPro IPR000907; LipOase.
IPR013819; LipOase_C.
IPR001024; LipOase_LH2.
IPR001246; LipOase_pln.
Graphical view of domain structure.
Gene3D G3DSA:2.60.60.20; Lipase_LipOase; 1.
PANTHER PTHR11771; LipOase; 1.
Pfam PF00305; Lipoxygenase; 1.
PF01477; PLAT; 1.
Pfam graphical view of domain structure.
PRINTS PR00087; LIPOXYGENASE.
PR00468; PLTLPOXGNASE.
SMART SM00308; LH2; 1.
SMART graphical view of domain structure.
PROSITE PS00711; LIPOXYGENASE_1; 1.
PS00081; LIPOXYGENASE_2; 1.
PS51393; LIPOXYGENASE_3; 1.
PS50095; PLAT; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS P24095.
Other
ProtoNet P24095.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Cytoplasm; Dioxygenase; Fatty acid biosynthesis; Iron; Lipid synthesis; Metal-binding; Oxidoreductase; Oxylipin biosynthesis.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   864  864     Seed lipoxygenase. PRO_0000220721
DOMAIN   44   171  128     PLAT. 
DOMAIN   174   864  691     Lipoxygenase. 
METAL   525   525        Iron; catalytic. 
METAL   530   530        Iron; catalytic. 
METAL   716   716        Iron; catalytic. 
METAL   720   720        Iron; catalytic. 
METAL   864   864        Iron; via carboxylate; catalytic. 
CONFLICT   233   233        S -> C (in Ref. 2; AAA03728). 
CONFLICT   240   240        R -> L (in Ref. 2; AAA03728). 
CONFLICT   604   604        D -> H (in Ref. 2; AAA03728). 
CONFLICT   695   695        M -> K (in Ref. 2; AAA03728). 
STRAND   11    19  9      
HELIX   20    22  3      
HELIX   25    28  4      
HELIX   58    60  3      
STRAND   66    76  11      
STRAND   78    80  3      
STRAND   82    89  8      
STRAND   92    94  3      
STRAND   105   111  7      
STRAND   120   127  8      
STRAND   129   131  3      
STRAND   133   141  9      
STRAND   144   146  3      
STRAND   149   157  9      
HELIX   160   162  3      
STRAND   163   165  3      
STRAND   167   172  6      
TURN   177   179  3      
HELIX   182   184  3      
HELIX   185   196  12      
HELIX   221   223  3      
STRAND   230   236  7      
HELIX   265   267  3      
HELIX   274   276  3      
HELIX   278   287  10      
HELIX   290   298  9      
HELIX   310   314  5      
TURN   315   317  3      
HELIX   325   331  7      
TURN   335   340  6      
STRAND   346   350  5      
STRAND   360   365  6      
HELIX   367   376  10      
STRAND   377   379  3      
STRAND   387   390  4      
HELIX   397   400  4      
HELIX   409   412  4      
HELIX   413   415  3      
TURN   416   418  3      
HELIX   421   426  6      
STRAND   430   434  5      
HELIX   436   439  4      
HELIX   440   442  3      
HELIX   443   447  5      
STRAND   456   463  8      
STRAND   469   478  10      
STRAND   481   486  6      
STRAND   489   493  5      
STRAND   497   500  4      
HELIX   501   522  22      
HELIX   523   529  7      
HELIX   530   543  14      
HELIX   549   554  6      
HELIX   555   558  4      
HELIX   561   571  11      
HELIX   578   582  5      
HELIX   586   588  3      
HELIX   589   597  9      
HELIX   602   604  3      
HELIX   607   613  7      
STRAND   616   619  4      
STRAND   621   623  3      
STRAND   626   632  7      
HELIX   635   658  24      
HELIX   662   667  6      
HELIX   669   680  12      
TURN   681   683  3      
HELIX   684   686  3      
STRAND   695   697  3      
HELIX   698   712  15      
HELIX   714   720  7      
HELIX   723   727  5      
TURN   730   732  3      
HELIX   747   754  8      
HELIX   756   761  6      
HELIX   767   780  14      
HELIX   802   825  24      
HELIX   832   834  3      
HELIX   836   838  3      
STRAND   851   853  3      
STRAND   859   861  3      
Sequence information
Length: 864 AA [This is the length of the unprocessed precursor] Molecular weight: 96817 Da [This is the MW of the unprocessed precursor] CRC64: 66F31FB1FA5F3B60 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MFGIFDKGQK IKGTVVLMPK NVLDFNAITS IGKGGVIDTA TGILGQGVSL VGGVIDTATS 

        70         80         90        100        110        120 
FLGRNISMQL ISATQTDGSG NGKVGKEVYL EKHLPTLPTL GARQDAFSIF FEWDASFGIP 

       130        140        150        160        170        180 
GAFYIKNFMT DEFFLVSVKL EDIPNHGTIE FVCNSWVYNF RSYKKNRIFF VNDTYLPSAT 

       190        200        210        220        230        240 
PAPLLKYRKE ELEVLRGDGT GKRKDFDRIY DYDVYNDLGN PDGGDPRPIL GGSSIYPYPR 

       250        260        270        280        290        300 
RVRTGRERTR TDPNSEKPGE VYVPRDENFG HLKSSDFLTY GIKSLSHDVI PLFKSAIFQL 

       310        320        330        340        350        360 
RVTSSEFESF EDVRSLYEGG IKLPTDILSQ ISPLPALKEI FRTDGENVLQ FPPPHVAKVS 

       370        380        390        400        410        420 
KSGWMTDEEF AREVIAGVNP NVIRRLQEFP PKSTLDPTLY GDQTSTITKE QLEINMGGVT 

       430        440        450        460        470        480 
VEEALSTQRL FILDYQDAFI PYLTRINSLP TAKAYATRTI LFLKDDGTLK PLAIELSKPH 

       490        500        510        520        530        540 
PDGDNLGPES IVVLPATEGV DSTIWLLAKA HVIVNDSGYH QLVSHWLNTH AVMEPFAIAT 

       550        560        570        580        590        600 
NRHLSVLHPI YKLLYPHYRD TININGLARQ SLINADGIIE KSFLPGKYSI EMSSSVYKNW 

       610        620        630        640        650        660 
VFTDQALPAD LVKRGLAIED PSAPHGLRLV IEDYPYAVDG LEIWDAIKTW VHEYVSLYYP 

       670        680        690        700        710        720 
TDAAVQQDTE LQAWWKEAVE KGHGDLKEKP WWPKMQTTED LIQSCSIIVW TASALHAAVN 

       730        740        750        760        770        780 
FGQYPYGGLI LNRPTLARRF IPAEGTPEYD EMVKNPQKAY LRTITPKFET LIDLSVIEIL 

       790        800        810        820        830        840 
SRHASDEIYL GERETPNWTT DKKALEAFKR FGSKLTGIEG KINARNSDPS LRNRTGPVQL 

       850        860 
PYTLLHRSSE EGLTFKGIPN SISI 

P24095 in FASTA format

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