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UniProtKB/Swiss-Prot entry P19920


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DCMM_OLICA
Primary accession number P19920
Secondary accession number Q51323
Integrated into Swiss-Prot on February 1, 1991
Sequence was last modified on July 11, 2002 (Sequence version 2)
Annotations were last modified on    July 22, 2008 (Entry version 69)
Name and origin of the protein
Protein name Carbon monoxide dehydrogenase medium chain
Synonyms CO dehydrogenase subunit M
CO-DH M
EC 1.2.99.2
Gene name
Name: coxM
From
Oligotropha carboxidovorans (Pseudomonas carboxydovorans) [TaxID: 40137] 
Encoded on Plasmid megaplasmid pHCG3.
Taxonomy Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=CH5 / OM5 / DSM 1227;
PubMed=7721710 [NCBI, ExPASy, EBI, Israel, Japan]
Schuebel U., Kraut M., Moersdorf G., Meyer O.;
"Molecular characterization of the gene cluster coxMSL encoding the molybdenum-containing carbon monoxide dehydrogenase of Oligotropha carboxidovorans.";
J. Bacteriol. 177:2197-2203(1995).
[2]
PROTEIN SEQUENCE OF 1-29.
DOI=10.1007/BF00245166; PubMed=1510563 [NCBI, ExPASy, EBI, Israel, Japan]
Hugendieck I., Meyer O.;
"The structural genes encoding CO dehydrogenase subunits (cox L, M and S) in Pseudomonas carboxydovorans OM5 reside on plasmid pHCG3 and are, with the exception of Streptomyces thermoautotrophicus, conserved in carboxydotrophic bacteria.";
Arch. Microbiol. 157:301-304(1992).
[3]
PROTEIN SEQUENCE OF 1-14.
STRAIN=CH5 / OM5 / DSM 1227;
DOI=10.1007/BF00425170; PubMed=2818128 [NCBI, ExPASy, EBI, Israel, Japan]
Kraut M., Hugendieck I., Herwig S., Meyer O.;
"Homology and distribution of CO dehydrogenase structural genes in carboxydotrophic bacteria.";
Arch. Microbiol. 152:335-341(1989).
[4]
X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS).
DOI=10.1073/pnas.96.16.8884; PubMed=10430865 [NCBI, ExPASy, EBI, Israel, Japan]
Dobbek H., Gremer L., Meyer O., Huber R.;
"Crystal structure and mechanism of CO dehydrogenase, a molybdo iron-sulfur flavoprotein containing S-selanylcysteine.";
Proc. Natl. Acad. Sci. U.S.A. 96:8884-8889(1999).
[5]
X-RAY CRYSTALLOGRAPHY (1.09 ANGSTROMS).
DOI=10.1073/pnas.212640899; PubMed=12475995 [NCBI, ExPASy, EBI, Israel, Japan]
Dobbek H., Gremer L., Kiefersauer R., Huber R., Meyer O.;
"Catalysis at a dinuclear CuSMo(==O)OH cluster in a CO dehydrogenase resolved at 1.1-A resolution.";
Proc. Natl. Acad. Sci. U.S.A. 99:15971-15976(2002).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
X82447; CAA57827.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A56279; A56279.
RefSeq YP_015603.1; -.
3D structure databases
PDB
1N5W; X-ray; 1.50 A; C/F=1-288.[ExPASy / RCSB / EBI]
1N60; X-ray; 1.19 A; C/F=1-288.[ExPASy / RCSB / EBI]
1N61; X-ray; 1.30 A; C/F=1-288.[ExPASy / RCSB / EBI]
1N62; X-ray; 1.09 A; C/F=1-288.[ExPASy / RCSB / EBI]
1N63; X-ray; 1.21 A; C/F=1-288.[ExPASy / RCSB / EBI]
1ZXI; X-ray; 1.70 A; C/F=1-288.[ExPASy / RCSB / EBI]
Detailed list of linked structures.
PDBsum 1N5W; -.
1N60; -.
1N61; -.
1N62; -.
1N63; -.
1ZXI; -.
ModBase P19920.
Ontologies
GO
GO:0018492; Molecular function: carbon-monoxide dehydrogenase (acceptor) activity (inferred from electronic annotation from EC).
QuickGo view.
Family and domain databases
InterPro IPR005107; CO_DHase_flav_C.
IPR016169; CO_DHase_flavot_FAD-bd_sub2.
IPR016167; FAD-bd_2_sub1.
IPR002346; Mopterin_DHase_FAD-bd.
Graphical view of domain structure.
Gene3D G3DSA:3.30.390.50; CO_DH_flav_C; 1.
G3DSA:3.30.465.10; CO_DH_flavoprot_FAD-bd_sub2; 1.
G3DSA:3.30.43.10; FAD-binding_2_sub1; 1.
Pfam PF03450; CO_deh_flav_C; 1.
PF00941; FAD_binding_5; 1.
Pfam graphical view of domain structure.
PROSITE PS51387; FAD_PCMH; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS P19920.
Genome annotation databases
GeneID 2807116; -.
Other
ProtoNet P19920.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Direct protein sequencing; FAD; Flavoprotein; Oxidoreductase; Plasmid.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
CHAIN   1   288  288     Carbon monoxide dehydrogenase medium chain. PRO_0000079813
DOMAIN   1   177  177     FAD-binding PCMH-type. 
NP_BIND   32    36  5     FAD. 
NP_BIND   111   115  5     FAD. 
CONFLICT   1     1        M -> MM (in Ref. 3; AA sequence). 
STRAND   7     9  3      
HELIX   14    24  11      
HELIX   25    27  3      
STRAND   28    33  6      
HELIX   37    42  6      
STRAND   49    53  5      
HELIX   58    60  3      
STRAND   63    66  4      
STRAND   69    73  5      
HELIX   78    83  6      
HELIX   85    90  6      
HELIX   92    98  7      
HELIX   104   109  6      
HELIX   112   117  6      
HELIX   125   132  8      
STRAND   135   140  6      
STRAND   143   148  6      
HELIX   149   152  4      
STRAND   153   155  3      
STRAND   158   160  3      
STRAND   166   173  8      
STRAND   180   186  7      
STRAND   195   205  11      
STRAND   208   222  15      
HELIX   227   233  7      
HELIX   240   251  12      
HELIX   264   285  22      
Sequence information
Length: 288 AA [This is the length of the unprocessed precursor] Molecular weight: 30241 Da [This is the MW of the unprocessed precursor] CRC64: E3EA980056731FC5 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MIPGSFDYHR PKSIADAVAL LTKLGEDARP LAGGHSLIPI MKTRLATPEH LVDLRDIGDL 

        70         80         90        100        110        120 
VGIREEGTDV VIGAMTTQHA LIGSDFLAAK LPIIRETSLL IADPQIRYMG TIGGNAANGD 

       130        140        150        160        170        180 
PGNDMPALMQ CLGAAYELTG PEGARIVAAR DYYQGAYFTA IEPGELLTAI RIPVPPTGHG 

       190        200        210        220        230        240 
YAYEKLKRKI GDYATAAAAV VLTMSGGKCV TASIGLTNVA NTPLWAEEAG KVLVGTALDK 

       250        260        270        280 
PALDKAVALA EAITAPASDG RGPAEYRTKM AGVMLRRAVE RAKARAKN 

P19920 in FASTA format

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View entry in raw text format (no links)
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