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UniProtKB/Swiss-Prot entry P16219


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name ACADS_HUMAN
Primary accession number P16219
Secondary accession number P78331
Integrated into Swiss-Prot on April 1, 1990
Sequence was last modified on April 1, 1990 (Sequence version 1)
Annotations were last modified on    September 2, 2008 (Entry version 107)
Name and origin of the protein
Protein name Short-chain specific acyl-CoA dehydrogenase, mitochondrial [Precursor]
Synonyms SCAD
EC 1.3.99.2
Butyryl-CoA dehydrogenase
Gene name
Name: ACADS
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
PubMed=2565344 [NCBI, ExPASy, EBI, Israel, Japan]
Naito E., Ozasa H., Ikeda Y., Tanaka K.;
"Molecular cloning and nucleotide sequence of complementary DNAs encoding human short chain acyl-coenzyme A dehydrogenase and the study of the molecular basis of human short chain acyl-coenzyme A dehydrogenase deficiency.";
J. Clin. Invest. 83:1605-1613(1989).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1007/s003359900612; PubMed=9383286 [NCBI, ExPASy, EBI, Israel, Japan]
Corydon M.J., Andresen B.S., Bross P., Kjeldsen M., Andreasen P.H., Eiberg H., Koelvraa S., Gregersen N.;
"Structural organization of the human short-chain acyl-CoA dehydrogenase gene.";
Mamm. Genome 8:922-926(1997).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Yamagata K., Oda N., Furuta H., Vaxillaire M., Southam L., Boriraj V., Chen X., Oda Y., Takeda J., Yamada S., Nishigori H., Lebeau M.M., Lathrop M., Cox R.D., Bell G.I.;
"Transcription map of the 5cM region surrounding the hepatocyte nuclear factor-1a/MODY3 gene on chromosome 12.";
Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Retinal pigment epithelium;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
PROTEIN SEQUENCE OF 25-34.
TISSUE=Liver;
PubMed=1286669 [NCBI, ExPASy, EBI, Israel, Japan]
Hochstrasser D.F., Frutiger S., Paquet N., Bairoch A., Ravier F., Pasquali C., Sanchez J.-C., Tissot J.-D., Bjellqvist B., Vargas R., Appel R.D., Hughes G.J.;
"Human liver protein map: a reference database established by microsequencing and gel comparison.";
Electrophoresis 13:992-1001(1992).
[6]
VARIANTS SCAD DEFICIENCY.
PubMed=1692038 [NCBI, ExPASy, EBI, Israel, Japan]
Naito E., Indo Y., Tanaka K.;
"Identification of two variant short chain acyl-coenzyme A dehydrogenase alleles, each containing a different point mutation in a patient with short chain acyl-coenzyme A dehydrogenase deficiency.";
J. Clin. Invest. 85:1575-1582(1990).
[7]
VARIANTS SCAD DEFICIENCY CYS-92; ARG-177 AND CYS-383, AND VARIANTS TRP-171 AND SER-209.
DOI=10.1093/hmg/7.4.619; PubMed=9499414 [NCBI, ExPASy, EBI, Israel, Japan]
Gregersen N., Winter V.S., Corydon M.J., Corydon T.J., Rinaldo P., Ribes A., Martinez G., Bennett M.J., Vianey-Saban C., Bhala A., Hale D.E., Lehnert W., Kmoch S., Roig M., Riudor E., Eiberg H., Andresen B.S., Bross P., Bolund L.A., Koelvraa S.;
"Identification of four new mutations in the short-chain acyl-CoA dehydrogenase (SCAD) gene in two patients: one of the variant alleles, 511C-->T, is present at an unexpectedly high frequency in the general population, as was the case for 625G-->A, together conferring susceptibility to ethylmalonic aciduria.";
Hum. Mol. Genet. 7:619-627(1998).
[8]
VARIANTS SCAD DEFICIENCY SER-90; GLU-104 DEL; VAL-192; TRP-325; LEU-353 AND TRP-380, AND VARIANTS TRP-171 AND SER-209.
DOI=10.1203/00006450-200101000-00008; PubMed=11134486 [NCBI, ExPASy, EBI, Israel, Japan]
Corydon M.J., Vockley J., Rinaldo P., Rhead W.J., Kjeldsen M., Winter V.S., Riggs C., Babovic-Vuksanovic D., Smeitink J., De Jong J., Levy H., Sewell A.C., Roe C., Matern D., Dasouki M., Gregersen N.;
"Role of common gene variations in the molecular pathogenesis of short-chain acyl-CoA dehydrogenase deficiency.";
Pediatr. Res. 49:18-23(2001).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
M26393; AAA60307.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Z80345; CAB02492.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
Z80347; CAB02492.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U83992; AAD00552.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
U83991; AAD00552.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC025963; AAH25963.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR A30605; A30605.
RefSeq NP_000008.1; -.
UniGene Hs.507076
3D structure databases
PDB
2VIG; X-ray; 1.90 A; A/B/C/D/E/F/G/H=30-412.[ExPASy / RCSB / EBI]
PDBsum 2VIG; -.
SMR P16219; 28-411.
ModBase P16219.
Enzyme and pathway databases
Reactome REACT_602; Lipid and lipoprotein metabolism.
2D gel databases
SWISS-2DPAGE P16219; -.
DOSAC-COBS-2DPAGE P16219; -.
Organism-specific databases
H-InvDB HIX0011071; -.
HGNC HGNC:90; ACADS.
GenAtlas ACADS.
HPA HPA004799; -.
MIM 201470; phenotype. [NCBI / EBI]
606885; gene. [NCBI / EBI]
Orphanet 26792; SCAD deficiency.
PharmGKB PA24426; -.
GeneCards P16219.
Gene expression databases
ArrayExpress P16219; -.
CleanEx HS_ACADS; -.
GermOnline ENSG00000122971; Homo sapiens.
Ontologies
GO
GO:0003995; Molecular function: acyl-CoA dehydrogenase activity (traceable author statement from ProtInc).
GO:0006635; Biological process: fatty acid beta-oxidation (traceable author statement from ProtInc).
QuickGo view.
Family and domain databases
InterPro IPR006091; Acyl-CoA_DHase/Oxase_M.
IPR006089; Acyl-CoA_DHase_CS.
IPR006092; Acyl-CoA_DHase_N.
IPR006090; Acyl-CoA_Oxase/DHase_1.
IPR013786; AcylCoA_DH/ox_N.
IPR013764; AcylCoA_oxidase/DH_1/2_C.
Graphical view of domain structure.
Gene3D G3DSA:2.40.110.10; Acyl_CoA_DH/ox_M; 1.
G3DSA:1.10.540.10; AcylCoA_DH/ox_N; 1.
G3DSA:1.20.140.10; AcylCoA_DH_1/2_C; 1.
Pfam PF00441; Acyl-CoA_dh_1; 1.
PF02770; Acyl-CoA_dh_M; 1.
PF02771; Acyl-CoA_dh_N; 1.
Pfam graphical view of domain structure.
PROSITE PS00072; ACYL_COA_DH_1; 1.
PS00073; ACYL_COA_DH_2; 1.
BLOCKS P16219.
Proteomic databases
PeptideAtlas P16219; -.
Genome annotation databases
Ensembl ENSG00000122971; Homo sapiens. [Contig view]
GeneID 35; -.
KEGG hsa:35; -.
NMPDR fig|9606.3.peg.8377; -.
Phylogenomic databases
HOGENOM P16219; -.
HOVERGEN P16219; -.
Other
DrugBank DB00157; NADH.
SOURCE ACADS; Homo sapiens.
ProtoNet P16219.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Direct protein sequencing; Disease mutation; FAD; Fatty acid metabolism; Flavoprotein; Lipid metabolism; Mitochondrion; Oxidoreductase; Polymorphism; Transit peptide.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
TRANSIT   1    24  24     Mitochondrion. 
CHAIN   25   412  388     Short-chain specific acyl-CoA dehydrogenase, mitochondrial. PRO_0000000498
NP_BIND   152   161  10     FAD (By similarity). 
NP_BIND   185   187  3     FAD (By similarity). 
NP_BIND   365   369  5     FAD (By similarity). 
NP_BIND   394   396  3     FAD (By similarity). 
ACT_SITE   392   392        Proton acceptor (By similarity). 
BINDING   297   297        FAD (By similarity). 
VARIANT   46    46  1     R -> W (in SCAD deficiency). VAR_000310 
VARIANT   90    90  1     G -> S (in SCAD deficiency; no detectable activity). VAR_013565 
VARIANT   92    92  1     G -> C (in SCAD deficiency). VAR_000311 
VARIANT   104   104  1     Missing (in SCAD deficiency; no detectable activity). VAR_013566
VARIANT   107   107  1     R -> C (in SCAD deficiency). VAR_000312 
VARIANT   171   171  1     R -> W (69% of wild-type activity; confers susceptibility to ethylmalonicaciduria; dbSNP:rs1800556 [NCBI]). VAR_013567 
VARIANT   177   177  1     W -> R (in SCAD deficiency). VAR_000314 
VARIANT   192   192  1     A -> V (in SCAD deficiency; no detectable activity). VAR_013568 
VARIANT   209   209  1     G -> S (86% of wild-type activity; confers susceptibility to ethylmalonicaciduria; dbSNP:rs1799958 [NCBI]). VAR_000315 
VARIANT   325   325  1     R -> W (in SCAD deficiency; no detectable activity). VAR_013569 
VARIANT   353   353  1     S -> L (in SCAD deficiency; no detectable activity). VAR_013570 
VARIANT   380   380  1     R -> W (in SCAD deficiency; no detectable activity). VAR_013571 
VARIANT   383   383  1     R -> C (in SCAD deficiency). VAR_000316 
VARIANT   383   383  1     R -> H (in dbSNP:rs35233375 [NCBI]). VAR_033458 
Sequence information
Length: 412 AA [This is the length of the unprocessed precursor] Molecular weight: 44297 Da [This is the MW of the unprocessed precursor] CRC64: 3E946ADFC3DA3C0E [This is a checksum on the sequence]
        10         20         30         40         50         60 
MAAALLARAS GPARRALCPR AWRQLHTIYQ SVELPETHQM LLQTCRDFAE KELFPIAAQV 

        70         80         90        100        110        120 
DKEHLFPAAQ VKKMGGLGLL AMDVPEELGG AGLDYLAYAI AMEEISRGCA STGVIMSVNN 

       130        140        150        160        170        180 
SLYLGPILKF GSKEQKQAWV TPFTSGDKIG CFALSEPGNG SDAGAASTTA RAEGDSWVLN 

       190        200        210        220        230        240 
GTKAWITNAW EASAAVVFAS TDRALQNKGI SAFLVPMPTP GLTLGKKEDK LGIRGSSTAN 

       250        260        270        280        290        300 
LIFEDCRIPK DSILGEPGMG FKIAMQTLDM GRIGIASQAL GIAQTALDCA VNYAENRMAF 

       310        320        330        340        350        360 
GAPLTKLQVI QFKLADMALA LESARLLTWR AAMLKDNKKP FIKEAAMAKL AASEAATAIS 

       370        380        390        400        410 
HQAIQILGGM GYVTEMPAER HYRDARITEI YEGTSEIQRL VIAGHLLRSY RS 

P16219 in FASTA format

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