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UniProtKB/Swiss-Prot entry O00300


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name TR11B_HUMAN
Primary accession number O00300
Secondary accession numbers O60236 Q53FX6 Q9UHP4
Integrated into Swiss-Prot on May 27, 2002
Sequence was last modified on May 27, 2002 (Sequence version 2)
Annotations were last modified on    June 10, 2008 (Entry version 76)
Name and origin of the protein
Protein name Tumor necrosis factor receptor superfamily member 11B [Precursor]
Synonyms Osteoprotegerin
Osteoclastogenesis inhibitory factor
Gene name
Name: TNFRSF11B
Synonyms: OCIF, OPG
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Kidney;
DOI=10.1016/S0092-8674(00)80209-3; PubMed=9108485 [NCBI, ExPASy, EBI, Israel, Japan]
Simonet W.S., Lacey D.L., Dunstan C.R., Kelley M., Chang M.-S., Luethy R., Nguyen H.Q., Wooden S., Bennett L., Boone T., Shimamoto G., Derose M., Elliott R., Colombero A., Tan H.-L., Trail G., Sullivan J., Davy E., Bucay N., Renshaw-Gegg L., Hughes T.M., Hill D., Pattison W., Campbell P., Sander S., Van G., Tarpley J., Derby P., Lee R., Suggs S., Boyle W.J.;
"Osteoprotegerin: a novel secreted protein involved in the regulation of bone density.";
Cell 89:309-319(1997).
[2]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Lung cancer;
DOI=10.1210/en.139.3.1329; PubMed=9492069 [NCBI, ExPASy, EBI, Israel, Japan]
Yasuda H., Shima N., Nakagawa N., Mochizuki S., Yano K., Fujise N., Sato Y., Goto M., Yamaguchi K., Kuriyama M., Kanno T., Murakami A., Tsuda E., Morinaga T., Higashio K.;
"Identity of osteoclastogenesis inhibitory factor (OCIF) and osteoprotegerin (OPG): a mechanism by which OPG/OCIF inhibits osteoclastogenesis in vitro.";
Endocrinology 139:1329-1337(1998).
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANT ASN-3.
TISSUE=Placenta;
PubMed=9688283 [NCBI, ExPASy, EBI, Israel, Japan]
Morinaga T., Nakagawa N., Yasuda H., Tsuda E., Higashio K.;
"Cloning and characterization of the gene encoding human osteoprotegerin/osteoclastogenesis-inhibitory factor.";
Eur. J. Biochem. 254:685-691(1998).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT ASN-3.
TISSUE=Lung;
Suzuki Y., Sugano S., Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S.;
Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANTS ASN-3 AND MET-104.
Livingston R.J., Rieder M.J., Chung M.-W., Ritchie T.K., Olson A.N., Nguyen C.P., Nguyen D.A., Poel C.L., Robertson P.D., Schackwitz W.S., Sherwood J.K., Sherwood A.M., Leithauser B.J., Nickerson D.A.;
"NIEHS-SNPs, environmental genome project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu).";
Submitted (NOV-2003) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT ASN-3.
TISSUE=Eye;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[7]
PROTEIN SEQUENCE OF 22-36 AND 378-401.
DOI=10.1006/bbrc.1998.8443; PubMed=9571159 [NCBI, ExPASy, EBI, Israel, Japan]
Tomoyasu A., Goto M., Fujise N., Mochizuki S., Yasuda H., Morinaga T., Tsuda E., Higashio K.;
"Characterization of monomeric and homodimeric forms of osteoclastogenesis inhibitory factor.";
Biochem. Biophys. Res. Commun. 245:382-387(1998).
[8]
PROTEIN SEQUENCE OF 22-36.
DOI=10.1110/ps.04682504; PubMed=15340161 [NCBI, ExPASy, EBI, Israel, Japan]
Zhang Z., Henzel W.J.;
"Signal peptide prediction based on analysis of experimentally verified cleavage sites.";
Protein Sci. 13:2819-2824(2004).
[9]
NUCLEOTIDE SEQUENCE [MRNA] OF 22-393.
TISSUE=Placenta;
PubMed=12110935 [NCBI, ExPASy, EBI, Israel, Japan]
He Z.-Y., Yang G.-Z., Zhang W.-J., Wu X.-F.;
"Cloning and expression of osteoprotegerin from Homo sapiens.";
Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao 31:680-684(1999).
[10]
PROTEIN SEQUENCE OF 242-255; 354-359 AND 369-378, AND FUNCTION.
DOI=10.1006/bbrc.1997.6603; PubMed=9168977 [NCBI, ExPASy, EBI, Israel, Japan]
Tsuda E., Goto M., Mochizuki S., Yano K., Kobayashi F., Morinaga T., Higashio K.;
"Isolation of a novel cytokine from human fibroblasts that specifically inhibits osteoclastogenesis.";
Biochem. Biophys. Res. Commun. 234:137-142(1997).
[11]
INTERACTION WITH TRAIL.
DOI=10.1074/jbc.273.23.14363; PubMed=9603945 [NCBI, ExPASy, EBI, Israel, Japan]
Emery J.G., McDonnell P., Burke M.B., Deen K.C., Lyn S., Silverman C., Dul E., Appelbaum E.R., Eichman C., DiPrinzio R., Dodds R.A., James I.E., Rosenberg M., Lee J.C., Young P.R.;
"Osteoprotegerin is a receptor for the cytotoxic ligand TRAIL.";
J. Biol. Chem. 273:14363-14367(1998).
[12]
CHARACTERIZATION, AND MUTAGENESIS OF CYS-400.
DOI=10.1074/jbc.273.9.5117; PubMed=9478964 [NCBI, ExPASy, EBI, Israel, Japan]
Yamaguchi K., Kinosaki M., Goto M., Kobayashi F., Tsuda E., Morinaga T., Higashio K.;
"Characterization of structural domains of human osteoclastogenesis inhibitory factor.";
J. Biol. Chem. 273:5117-5123(1998).
[13]
REVIEW.
DOI=10.1002/1097-0142(20010801)92:3<460::AID-CNCR1344>3.0.CO;2-D; PubMed=11505389 [NCBI, ExPASy, EBI, Israel, Japan]
Hofbauer L.C., Neubauer A., Heufelder A.E.;
"Receptor activator of nuclear factor-kappaB ligand and osteoprotegerin: potential implications for the pathogenesis and treatment of malignant bone diseases.";
Cancer 92:460-470(2001).
[14]
VARIANT JPD ASP-182 DEL.
DOI=10.1093/hmg/11.18.2119; PubMed=12189164 [NCBI, ExPASy, EBI, Israel, Japan]
Cundy T., Hegde M., Naot D., Chong B., King A., Wallace R., Mulley J., Love D.R., Seidel J., Fawkner M., Banovic T., Callon K.E., Grey A.B., Reid I.R., Middleton-Hardie C.A., Cornish J.;
"A mutation in the gene TNFRSF11B encoding osteoprotegerin causes an idiopathic hyperphosphatasia phenotype.";
Hum. Mol. Genet. 11:2119-2127(2002).
Comments
  • FUNCTION: Acts as decoy receptor for RANKL and thereby neutralizes its function in osteoclastogenesis. Inhibits the activation of osteoclasts and promotes osteoclast apoptosis in vitro. Bone homeostasis seems to depend on the local RANKL/OPG ratio. May also play a role in preventing arterial calcification. May act as decoy receptor for TRAIL and protect against apoptosis. TRAIL binding blocks the inhibition of osteoclastogenesis.
  • SUBUNIT: Homodimer.
  • SUBCELLULAR LOCATION: Secreted.
  • TISSUE SPECIFICITY: Highly expressed in adult lung, heart, kidney, liver, spleen, thymus, prostate, ovary, small intestine, thyroid, lymph node, trachea, adrenal gland, testis, and bone marrow. Detected at very low levels in brain, placenta and skeletal muscle. Highly expressed in fetal kidney, liver and lung.
  • INDUCTION: Up-regulated by increasing calcium-concentration in the medium and estrogens. Down-regulated by glucocorticoids.
  • PTM: N-glycosylated. Contains sialic acid residues.
  • PTM: The N-terminus is blocked.
  • DISEASE: Defects in TNFRSF11B are the cause of juvenile Paget disease (JPD) [MIM:239000]; also called hyperostosis corticalis deformans juvenilis or hereditary hyperphosphatasia or chronic congenital idiopathic hyperphosphatasia. JPD is a rare autosomal recessive osteopathy that presents in infancy or early childhood. The disorder is characterized by rapidly remodeling woven bone, osteopenia, debilitating fractures, and deformities due to a markedly accelerated rate of bone remodeling throughout the skeleton. Approximately 40 cases of JPD have been reported worldwide. Unless it is treated with drugs that block osteoclast-mediated skeletal resorption, the disease can be fatal.
  • SIMILARITY: Contains 2 death domains.
  • SIMILARITY: Contains 4 TNFR-Cys repeats.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U94332; AAB53709.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB002146; BAA25910.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AB008822; BAA32076.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AK223155; BAD96875.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AY466112; AAR23265.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC030155; AAH30155.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF134187; AAF20168.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq NP_002537.3; -.
UniGene Hs.81791
3D structure databases
HSSP O14763; 1D0G. [HSSP ENTRY / PDB]
ModBase O00300.
Polymorphism databases
NIEHS-SNPs TNFRSF11B.
Organism-specific databases
H-InvDB HIX0007748; -.
HGNC HGNC:11909; TNFRSF11B.
GeneLynx TNFRSF11B; Homo sapiens.
GenAtlas TNFRSF11B.
MIM 239000; phenotype. [NCBI / EBI]
602643; gene. [NCBI / EBI]
Orphanet 2801; Paget disease juvenile type.
PharmGKB PA36602; -.
GeneCards O00300.
Gene expression databases
ArrayExpress O00300; -.
CleanEx HS_TNFRSF11B; -.
GermOnline ENSG00000164761; Homo sapiens.
Ontologies
GO
GO:0005576; Cellular component: extracellular region (traceable author statement from ProtInc).
GO:0005125; Molecular function: cytokine activity (traceable author statement from ProtInc).
GO:0004872; Molecular function: receptor activity (traceable author statement from ProtInc).
GO:0007165; Biological process: signal transduction (traceable author statement from ProtInc).
GO:0001501; Biological process: skeletal development (traceable author statement from ProtInc).
QuickGo view.
Family and domain databases
InterPro IPR000488; Death.
IPR017371; TNFR_11B.
IPR001368; TNFR_c6.
Graphical view of domain structure.
Pfam PF00531; Death; 1.
PF00020; TNFR_c6; 3.
Pfam graphical view of domain structure.
PIRSF PIRSF038065; TNFR_11B; 1.
SMART SM00208; TNFR; 4.
SMART graphical view of domain structure.
PROSITE PS50017; DEATH_DOMAIN; FALSE_NEG.
PS00652; TNFR_NGFR_1; 1.
PS50050; TNFR_NGFR_2; 2.
PROSITE graphical view of domain structure (profiles).
BLOCKS O00300.
Genome annotation databases
Ensembl ENSG00000164761; Homo sapiens. [Contig view]
GeneID 4982; -.
KEGG hsa:4982; -.
Phylogenomic databases
HOGENOM O00300; -.
HOVERGEN O00300; -.
Other
SOURCE TNFRSF11B; Homo sapiens.
ProtoNet O00300.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
Apoptosis; Direct protein sequencing; Disease mutation; Glycoprotein; Polymorphism; Receptor; Repeat; Secreted; Signal.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    21  21      
CHAIN   22   401  380     Tumor necrosis factor receptor superfamily member 11B. PRO_0000034587
REPEAT   24    62  39     TNFR-Cys 1. 
REPEAT   65   105  41     TNFR-Cys 2. 
REPEAT   107   142  36     TNFR-Cys 3. 
REPEAT   145   185  41     TNFR-Cys 4. 
DOMAIN   198   269  72     Death 1. 
DOMAIN   270   365  96     Death 2. 
SITE   400   400  1     Involved in dimerization. 
CARBOHYD   98    98        N-linked (GlcNAc...) (Potential). 
CARBOHYD   152   152        N-linked (GlcNAc...) (Potential). 
CARBOHYD   165   165        N-linked (GlcNAc...) (Potential). 
CARBOHYD   178   178        N-linked (GlcNAc...) (Potential). 
CARBOHYD   289   289        N-linked (GlcNAc...) (Potential). 
DISULFID   41    54        By similarity. 
DISULFID   44    62        By similarity. 
DISULFID   65    80        By similarity. 
DISULFID   83    97        By similarity. 
DISULFID   87   105        By similarity. 
DISULFID   107   118        By similarity. 
DISULFID   124   142        By similarity. 
DISULFID   145   160        By similarity. 
DISULFID   166   185        By similarity. 
VARIANT   3     3  1     K -> N (in dbSNP:rs2073618 [NCBI]). VAR_013439 
VARIANT   104   104  1     V -> M (in dbSNP:rs11573906 [NCBI]). VAR_018957 
VARIANT   182   182  1     Missing (in JPD). VAR_019413
MUTAGEN   400   401        Missing: Abolishes dimerization. 
MUTAGEN   400   400        C->S: Abolishes dimerization. 
CONFLICT   263   263        D -> A (in Ref. 1; AAB53709). 
Sequence information
Length: 401 AA [This is the length of the unprocessed precursor] Molecular weight: 46040 Da [This is the MW of the unprocessed precursor] CRC64: EDF448B67D86C71E [This is a checksum on the sequence]
        10         20         30         40         50         60 
MNKLLCCALV FLDISIKWTT QETFPPKYLH YDEETSHQLL CDKCPPGTYL KQHCTAKWKT 

        70         80         90        100        110        120 
VCAPCPDHYY TDSWHTSDEC LYCSPVCKEL QYVKQECNRT HNRVCECKEG RYLEIEFCLK 

       130        140        150        160        170        180 
HRSCPPGFGV VQAGTPERNT VCKRCPDGFF SNETSSKAPC RKHTNCSVFG LLLTQKGNAT 

       190        200        210        220        230        240 
HDNICSGNSE STQKCGIDVT LCEEAFFRFA VPTKFTPNWL SVLVDNLPGT KVNAESVERI 

       250        260        270        280        290        300 
KRQHSSQEQT FQLLKLWKHQ NKDQDIVKKI IQDIDLCENS VQRHIGHANL TFEQLRSLME 

       310        320        330        340        350        360 
SLPGKKVGAE DIEKTIKACK PSDQILKLLS LWRIKNGDQD TLKGLMHALK HSKTYHFPKT 

       370        380        390        400 
VTQSLKKTIR FLHSFTMYKL YQKLFLEMIG NQVQSVKISC L 

O00300 in FASTA format

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