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UniProtKB/Swiss-Prot entry P55899


[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name FCGRN_HUMAN
Primary accession number P55899
Secondary accession numbers Q9HBV7 Q9NZ19
Integrated into Swiss-Prot on November 1, 1997
Sequence was last modified on November 1, 1997 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 75)
Name and origin of the protein
Protein name IgG receptor FcRn large subunit p51 [Precursor]
Synonyms FcRn
Neonatal Fc receptor
IgG Fc fragment receptor transporter alpha chain
Gene name
Name: FCGRT
Synonyms: FCRN
From
Homo sapiens (Human) [TaxID: 9606] 
Taxonomy Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
Protein existence 1: Evidence at protein level;
References
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Placenta;
DOI=10.1084/jem.180.6.2377; PubMed=7964511 [NCBI, ExPASy, EBI, Israel, Japan]
Story C.M., Mikulska J., Simister N.E.;
"A major histocompatibility complex class I-like Fc receptor cloned from human placenta: possible role in transfer of immunoglobulin G from mother to fetus.";
J. Exp. Med. 180:2377-2381(1994).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Tiwari B., Junghans R.P.;
"Partial sequence of the human fcgrt gene and its 5' upstream region.";
Submitted (JAN-2000) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
DOI=10.1046/j.1365-2370.2000.00225.x; PubMed=10998088 [NCBI, ExPASy, EBI, Israel, Japan]
Mikulska J.E., Pablo L., Canel J., Simister N.E.;
"Cloning and analysis of the gene encoding the human neonatal Fc receptor.";
Eur. J. Immunogenet. 27:231-240(2000).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Brain;
DOI=10.1101/gr.2596504; PubMed=15489334 [NCBI, ExPASy, EBI, Israel, Japan]
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
PROTEIN SEQUENCE OF 24-38.
DOI=10.1110/ps.04682504; PubMed=15340161 [NCBI, ExPASy, EBI, Israel, Japan]
Zhang Z., Henzel W.J.;
"Signal peptide prediction based on analysis of experimentally verified cleavage sites.";
Protein Sci. 13:2819-2824(2004).
[6]
X-RAY CRYSTALLOGRAPHY (2.7 ANGSTROMS) OF 24-290.
DOI=10.1021/bi000749m; PubMed=10933786 [NCBI, ExPASy, EBI, Israel, Japan]
West A.P. Jr., Bjorkman P.J.;
"Crystal structure and immunoglobulin G binding properties of the human major histocompatibility complex-related Fc receptor.";
Biochemistry 39:9698-9708(2000).
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
U12255; AAA58958.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF220542; AAF72596.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF200220; AAG31421.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
AF200219; AAG31421.1; JOINED; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
BC008734; AAH08734.1; -; mRNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
PIR I38720; I38720.
RefSeq NP_004098.1; -.
UniGene Hs.111903
3D structure databases
PDB
1EXU; X-ray; 2.70 A; A=24-290.[ExPASy / RCSB / EBI]
PDBsum 1EXU; -.
ModBase P55899.
Protein-protein interaction databases
DIP DIP:6165N; -.
Organism-specific databases
H-InvDB HIX0015331; -.
HGNC HGNC:3621; FCGRT.
GenAtlas FCGRT.
HPA HPA012122; -.
HPA015130; -.
MIM 601437; gene. [NCBI / EBI]
PharmGKB PA28067; -.
GeneCards P55899.
Gene expression databases
ArrayExpress P55899; -.
CleanEx HS_FCGRT; -.
GermOnline ENSG00000104870; Homo sapiens.
Ontologies
GO
GO:0016021; Cellular component: integral to membrane (inferred from electronic annotation from UniProtKB-KW).
GO:0042612; Cellular component: MHC class I protein complex (inferred from electronic annotation from InterPro).
GO:0019864; Molecular function: IgG binding (inferred from electronic annotation from UniProtKB-KW).
GO:0004872; Molecular function: receptor activity (traceable author statement from ProtInc).
GO:0019882; Biological process: antigen processing and presentation (inferred from electronic annotation from InterPro).
GO:0007565; Biological process: female pregnancy (traceable author statement from ProtInc).
GO:0006955; Biological process: immune response (traceable author statement from ProtInc).
QuickGo view.
Family and domain databases
InterPro IPR007110; Ig-like.
IPR013783; Ig-like_fold.
IPR003006; Ig/MHC_CS.
IPR003597; Ig_C1-set.
IPR011161; MHC_I-like_Ag-recog.
IPR001039; MHC_I_a_a1/a2.
Graphical view of domain structure.
Gene3D G3DSA:2.60.40.10; Ig-like_fold; 1.
G3DSA:3.30.500.10; MHC_I-like_Ag-recog; 1.
Pfam PF07654; C1-set; 1.
PF00129; MHC_I; 1.
Pfam graphical view of domain structure.
SMART SM00407; IGc1; 1.
SMART graphical view of domain structure.
PROSITE PS50835; IG_LIKE; 1.
PS00290; IG_MHC; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS P55899.
ProtoNet P55899.
Genome annotation databases
Ensembl ENSG00000104870; Homo sapiens. [Contig view]
GeneID 2217; -.
KEGG hsa:2217; -.
Phylogenomic databases
HOGENOM P55899; -.
HOVERGEN P55899; -.
Other
NextBio 8991; -.
SOURCE FCGRT; Homo sapiens.
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
3D-structure; Cell membrane; Direct protein sequencing; Glycoprotein; IgG-binding protein; Immunoglobulin domain; Membrane; Receptor; Signal; Transmembrane.
Features
SEVIEWER logo Feature table viewer FT aligner logo Feature aligner
KeyFrom   To Length Description FTId
SIGNAL   1    23  23      
CHAIN   24   365  342     IgG receptor FcRn large subunit p51. PRO_0000015157
TOPO_DOM   24   297  274     Extracellular (Potential). 
TRANSMEM   298   321  24     Potential. 
TOPO_DOM   322   365  44     Cytoplasmic (Potential). 
REGION   24   110  87     Alpha-1. 
REGION   111   200  90     Alpha-2. 
REGION   201   290  90     Alpha-3. 
REGION   291   297  7     Connecting peptide. 
CARBOHYD   125   125        N-linked (GlcNAc...) (Potential). 
DISULFID   119   182         
DISULFID   221   275         
CONFLICT   101   103        Missing (in Ref. 3; AAG31421). 
CONFLICT   201   201        E -> G (in Ref. 2; AAF72596). 
STRAND   29    39  11      
STRAND   46    53  8      
STRAND   56    62  7      
TURN   63    65  3      
HELIX   85   103  19      
STRAND   112   121  10      
STRAND   127   135  9      
STRAND   138   144  7      
TURN   145   148  4      
STRAND   149   151  3      
HELIX   155   165  11      
HELIX   170   179  10      
HELIX   181   191  11      
HELIX   194   197  4      
STRAND   204   211  8      
STRAND   216   229  14      
STRAND   231   237  7      
STRAND   249   251  3      
STRAND   257   266  10      
HELIX   270   272  3      
STRAND   273   279  7      
STRAND   282   284  3      
STRAND   286   289  4      
Sequence information
Length: 365 AA [This is the length of the unprocessed precursor] Molecular weight: 39743 Da [This is the MW of the unprocessed precursor] CRC64: C886C6A1F66A0D89 [This is a checksum on the sequence]
        10         20         30         40         50         60 
MGVPRPQPWA LGLLLFLLPG SLGAESHLSL LYHLTAVSSP APGTPAFWVS GWLGPQQYLS 

        70         80         90        100        110        120 
YNSLRGEAEP CGAWVWENQV SWYWEKETTD LRIKEKLFLE AFKALGGKGP YTLQGLLGCE 

       130        140        150        160        170        180 
LGPDNTSVPT AKFALNGEEF MNFDLKQGTW GGDWPEALAI SQRWQQQDKA ANKELTFLLF 

       190        200        210        220        230        240 
SCPHRLREHL ERGRGNLEWK EPPSMRLKAR PSSPGFSVLT CSAFSFYPPE LQLRFLRNGL 

       250        260        270        280        290        300 
AAGTGQGDFG PNSDGSFHAS SSLTVKSGDE HHYCCIVQHA GLAQPLRVEL ESPAKSSVLV 

       310        320        330        340        350        360 
VGIVIGVLLL TAAAVGGALL WRRMRSGLPA PWISLRGDDT GVLLPTPGEA QDADLKDVNV 


IPATA 

P55899 in FASTA format

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