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UniProtKB/Swiss-Prot entry A4YD25

[Entry info] [Name and origin] [References] [Comments] [Cross-references] [Keywords] [Features] [Sequence] [Tools]

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Entry information
Entry name DNLI_METS5
Primary accession number A4YD25
Secondary accession numbers None
Integrated into Swiss-Prot on February 26, 2008
Sequence was last modified on May 29, 2007 (Sequence version 1)
Annotations were last modified on    November 25, 2008 (Entry version 13)
Name and origin of the protein
Protein name DNA ligase
Synonyms EC 6.5.1.1
Polydeoxyribonucleotide synthase [ATP]
Gene name
Name: lig
OrderedLocusNames: Msed_0150
From
Metallosphaera sedula (strain ATCC 51363 / DSM 5348) [TaxID: 399549] [HAMAP proteome]
Taxonomy Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Metallosphaera.
Protein existence 3: Inferred from homology;
References
[1]
 NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Han C., Detter J.C., Bruce D., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Maezato Y., Auernik K.S., Kelly R.M., Blum P., Richardson P.;
"Complete sequence of Metallosphaera sedula DSM 5348.";
Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases.
Comments
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms. Distributed under the Creative Commons Attribution-NoDerivs License.
Cross-references
Sequence databases
EMBL
CP000682; ABP94327.1; -; Genomic_DNA.[EMBL / GenBank / DDBJ] [CoDingSequence]
RefSeq YP_001190251.1; -.
3D structure databases
ModBase A4YD25.
Ontologies
GO
GO:0005524; Molecular function: ATP binding (inferred from electronic annotation from HAMAP).
GO:0003677; Molecular function: DNA binding (inferred from electronic annotation from InterPro).
GO:0003910; Molecular function: DNA ligase (ATP) activity (inferred from electronic annotation from HAMAP).
GO:0007049; Biological process: cell cycle (inferred from electronic annotation from UniProtKB-KW).
GO:0051301; Biological process: cell division (inferred from electronic annotation from UniProtKB-KW).
GO:0006310; Biological process: DNA recombination (inferred from electronic annotation from HAMAP).
GO:0006281; Biological process: DNA repair (inferred from electronic annotation from HAMAP).
GO:0006260; Biological process: DNA replication (inferred from electronic annotation from HAMAP).
QuickGo view.
Family and domain databases
HAMAP MF_00407; -; 1.
PBIL [Tree]
InterPro IPR000977; DNA_ligase.
IPR012309; DNA_ligase_A_C.
IPR012310; DNA_ligase_A_M.
IPR012308; DNA_ligase_A_N.
IPR016059; DNA_ligase_CS.
Graphical view of domain structure.
Pfam PF04679; DNA_ligase_A_C; 1.
PF01068; DNA_ligase_A_M; 1.
PF04675; DNA_ligase_A_N; 1.
Pfam graphical view of domain structure.
TIGRFAMs TIGR00574; dnl1; 1.
PROSITE PS00697; DNA_LIGASE_A1; 1.
PS00333; DNA_LIGASE_A2; 1.
PS50160; DNA_LIGASE_A3; 1.
PROSITE graphical view of domain structure (profiles).
BLOCKS A4YD25.
ProtoNet A4YD25.
Genome annotation databases
GeneID 5105003; -.
GenomeReviews CP000682_GR; Msed_0150.
KEGG mse:Msed_0150; -.
CMR A4YD25; Msed_0150.
Other
UniRef View cluster of proteins with at least 50% / 90% / 100% identity.
Keywords
ATP-binding; Cell cycle; Cell division; Complete proteome; DNA damage; DNA recombination; DNA repair; DNA replication; Ligase; Nucleotide-binding.
Features
SEVIEWER logo Feature table viewer
KeyFrom   To Length Description FTId
CHAIN   1   598  598     DNA ligase. PRO_1000072271
ACT_SITE   261   261        N6-AMP-lysine intermediate (By similarity). 
Sequence information
Length: 598 AA [This is the length of the unprocessed precursor] Molecular weight: 67922 Da [This is the MW of the unprocessed precursor] CRC64: A9C70DF05DA44BB0 [This is a checksum on the sequence] 
        10         20         30         40         50         60 
MKFKLIAEYF DRLEKISSRI QLTSLLSDLF KNTEREVIDK VVYLIQGRLW PDFTGMPEIG 

        70         80         90        100        110        120 
MGEKFLIKAI AMAYGNKEEE VEKLYKNIGD LGEVAYSLRS KVKGVSILSF VGGNQEAGEL 

       130        140        150        160        170        180 
DVMEVYNELV KIATSTGEGS RDIKIRIFAG LIKKATPIEA KYLVRFVEGR LRLGIGDATV 

       190        200        210        220        230        240 
LDALAITFGG SADYRPIVER AYNLRADLGD IARVIATEGI EKLKNISPTP GIPIRPMLAE 

       250        260        270        280        290        300 
RLPDPEEIME KMNGKALVDY KYDGERAQIH RKGDKVTIFS RRMENITDQY IDVTEYVKQF 

       310        320        330        340        350        360 
VKGDNFIVEG EIVPVDPESG EMRPFQELMH RRRKNNIAEA IKEYPVNLFL FDLMFFEGED 

       370        380        390        400        410        420 
YTTKPLPERR AKLEEILASN DKVHIASHII ADRVDKLREY FYQAISEGAE GVMVKSIGPD 

       430        440        450        460        470        480 
SIYQAGSRGW LWIKLKRDYQ SEMADTVDLV VVGAFYGKGK RGGKFSSLLM AAYNPEKDVF 

       490        500        510        520        530        540 
ETVCKVASGF SDQELDEMQK KINELKREQK HPRVVSDMIP DVWVSPTLVA EVIGAEITIS 

       550        560        570        580        590 
PLHTCCRGEK GGLSIRFPRF IRWRDDKSPE DATTNQEIME MYSKQLKKIE EKPVDENI
A4YD25 in FASTA format

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