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Popitam

Interface: latest update 5/02/2009
Popitam: version 4.0 (1/02/2009)

Popitam is a method designed to characterize peptides with mutations or unexpected post-translational modifications using MS/MS data. A short description of the algorithm can be found here (pdf document, about 2Mb).

More about Popitam


About the examples
Input data parameter
Data file :
Data file content :
Data file format :
Other general parameters
Database : Release 56.7 of 20-Jan-2009
Release 39.7 of 20-Jan-2009
decoy
AC list (< 2000) :
Required parameter.
Instrument :
Fragment error : Da
Enzyme :
Allow up to missed cleavage
Scoring function (facultative parameter)
If nothing is specified, popitam will use its default scoring functions.
Scoring file :
Scoring file content :
Open-modification search parameters
modGap number :
Precursor mass range to Da
modGap mass range to Da
Output parameters
Number of displayed peptides :
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ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us Proteomics tools
Hosted by au flag APAF Australia Mirror sites: Brazil Canada China Korea Switzerland