UniProtKB/Swiss-Prot

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• • • Genes & Genomes
  • • Proteins & Proteomes
  • • Structural Biology

  • • Database

  ViralZone

  Fact sheets about viruses linked to sequence databases
• • • Evolution & Phylogeny

  • • Database

  OrthoDB

  Ortholog evolutionary and functional annotations
• • • Proteins & Proteomes

  • • Database

  UniProtKB

  Protein sequence database
• • • Proteins & Proteomes

  • • Software tool

  HAMAP-Scan

  Scanning of protein sequences against HAMAP families
• • • Proteins & Proteomes

  • • Database
  • • Software tool

  HAMAP

  UniProtKB family classification and annotation
• • • Genomics

  • • Database

  TASmania

  Toxin-antitoxin database
• • • Genomics

  • • Software tool

  TASer

  Search tool associated to TASmania
• • • Evolution & Phylogeny

  • • Database

  OrthoDB SPARQL endpoint

  SPARQL access to the OrthoDB catalog of orthologs
• • • Proteins & Proteomes

  • • Database

  UniProt SPARQL endpoint

  SPARQL access to UniProt and related data
• • • Proteins & Proteomes

  • • Database

  HAMAP SPARQL endpoint

  SPARQL access to the HAMAP annotation rules
• • • Proteins & Proteomes

  • • Software tool

  ScanProsite

  Protein sequences against PROSITE
• • • Evolution & Phylogeny

  • • Software tool

  OrthoLoger

  Accurate and scalable inference of groups of orthologs
• • • Evolution & Phylogeny

  • • Database
  • • Software tool

  OMA

  Orthology inference among complete genomes
• • • Proteins & Proteomes
  • • Systems Biology

  • • Database
  • • Software tool

  STRING

  Protein-protein interaction networks and enrichment analysis
• • • Glycomics

  • • Software tool

  Glydin'

  Network representation of known glycan determinants
• • • Glycomics

  • • Software tool

  EpitopeXtractor

  Compare glycan structures to Glydin' network's collection
• • • Proteins & Proteomes
  • • Lipidomics

  • • Database

  SwissLipids

  Knowledge resource for lipids
• • • Proteins & Proteomes
  • • Systems Biology
    • , Metabolomics

  • • Database

  Rhea

  Expert-curated database of biochemical reactions
• • • Proteins & Proteomes

  • • Database

  ENZYME

  Enzyme nomenclature database
• • • Proteins & Proteomes
  • • Systems Biology
    • , Metabolomics

  • • Database

  Rhea SPARQL endpoint

  SPARQL access to the Rhea knowledgebase
• • • Systems Biology
    • , Glycomics

  • • Software tool

  HMO-Glycologue

  Simulator of Human Milk Oligosaccharide synthesis
• • • Proteins & Proteomes
  • • Lipidomics

  • • Database

  SwissLipids SPARQL endpoint

  SPARQL access to the SwissLipids knowledgebase
• • • Proteins & Proteomes
  • • Systems Biology

  • • Database

  STRING SPARQL endpoint

  SPARQL access to the STRING knowledgebase
• • • Systems Biology

  • • Software tool

  OMAMO

  OMAMO allows the user to find the best simple model organism
• • • Proteins & Proteomes
  • • Systems Biology

  • • Database

  TCS

  Predict interaction specificity in bacterial signalling
• • • Proteins & Proteomes
  • • Structural analysis

  • • Software tool

  QMEAN

  Protein model quality estimation
• • • Proteins & Proteomes
  • • Structural Biology
    • , Structural analysis

  • • Software tool

  SWISS-MODEL Workspace

  Fully automated protein structure homology-modeling server
• • • Proteins & Proteomes
  • • Structural Biology

  • • Database
  • • Software tool

  SWISS-MODEL

  Protein structure homology-modelling
• • • Proteins & Proteomes
  • • Systems Biology

  • • Database

  Protein Universe Atlas

  Interactive, annotated similarity network of all proteins
• • • Text mining & Machine learning

  • • Software tool

  Variomes

  Search engine to support the curation of genomic variants
• • • Genomics
    • , Transcriptomics

  • • Database

  Glittr

  Git repositories with bioinformatics training material
• • • Systems Biology

  • • Database

  Cellosaurus

  Knowledge resource on cell lines
• • • Genes & Genomes
    • , Genomics
    • , Transcriptomics
  • • Evolution & Phylogeny
  • • Systems Biology

  • • Database
  • • Software tool

  SwissRegulon Portal

  Tools and data for regulatory genomics
• • • Genes & Genomes
  • • Systems Biology

  • • Software tool

  CREMA

  Cis-Regulatory Element Motif Activities
• • • Genomics
    • , Transcriptomics
  • • Systems Biology

  • • Software tool

  CRUNCH

  Automated pipeline for ChIP-seq data analysis
• • • Proteins & Proteomes
  • • Glycomics

  • • Software tool

  GlycoSiteAlign

  Multiple alignment of sequences around glycosylation sites
• • • Proteins & Proteomes
  • • Glycomics

  • • Database
  • • Software tool

  GlyConnect

  Integrated data platform to study glycosylation
• • • Proteins & Proteomes

  • • Software tool

  PRATT

  Conserved patterns in a set of protein sequences
• • • Proteins & Proteomes

  • • Database

  PROSITE

  Protein family and domain database
• • • Proteins & Proteomes
  • • Glycomics

  • • Database

  GlyConnect SPARQL endpoint

  SPARQL access to GlyConnect
• • • Proteins & Proteomes
  • • Text mining & Machine learning

  • • Database

  MHC Motif Atlas

  MHC Motif Atlas