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PPAP
The UniProtKB/Swiss-Prot Plant Proteome Annotation Program |
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Arabidopsis references
Chromosome I complete sequence
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O.,
Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan
A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K., Conn L., Conway A.B.,
Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng
J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F.,
Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S.,
Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam
B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin
X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J.,
Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham
P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R.,
Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J.,
Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker
M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.";
Nature 408:816-820(2000).
(PubMed=11130712)
Chromosome II complete sequence
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii
C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R.,
Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A.,
Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D.,
Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P.,
Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
Nature 402:761-768(1999).
(PubMed=10617197)
Chromosome III complete sequence
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M.,
Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave
F., Robert C., Brottier P., Wincker P., Cattolico L., Weissenbach J., Saurin
W., Quetier F., Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V.,
Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S., Wiedelmann R.,
Kranz H., Voss H., Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo
M., Pallavicini A., Toppo S., Simionati B., Conrad A., Hornischer K., Kauer
G., Loehnert T.-H., Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues
M., Terol J., Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder
B., Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy
D., de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E., Monfort
A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G., Haase D.,
Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X., Kaul S., Town
C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M., Walts A., Utterback
T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B., Maiti R., Wu D., Peterson
J., Van Aken S., Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum
T.V., Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E., Sasamoto
S., Kimura T., Idesawa K., Kawashima K., Kishida Y., Kiyokawa C., Kohara
M., Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Shinpo
S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
Nature 408:820-822(2000).
(PubMed=11130713)
Other chromosome III papers
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. I. Sequence
features of the regions of 4,504,864 bp covered by sixty P1 and TAC clones.";
DNA Res. 7:131-135(2000).
(PubMed=10819329)
Kaneko T., Katoh T., Sato S., Nakamura A., Asamizu E., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence
features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones.";
DNA Res. 7:217-221(2000).
(PubMed=10907853)
Chromosome IV complete sequence
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G., Pohl T.,
Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N., Harris B., Ansorge
W., Brandt P., Grivell L.A., Rieger M., Weichselgartner M., de Simone V.,
Obermaier B., Mache R., Mueller M., Kreis M., Delseny M., Puigdomenech P.,
Watson M., Schmidtheini T., Reichert B., Portetelle D., Perez-Alonso M., Boutry
M., Bancroft I., Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J., Van der Schueren J., Grymonprez
B., Chuang Y.-J., Vandenbussche F., Braeken M., Weltjens I., Voet M., Bastiaens
I., Aert R., Defoor E., Weitzenegger T., Bothe G., Ramsperger U., Hilbert
H., Braun M., Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P., Berneiser
S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H., De Keyser A.,
Buysshaert C., Gielen J., Villarroel R., De Clercq R., Van Montagu M., Rogers
J., Cronin A., Quail M., Bray-Allen S., Clark L., Doggett J., Hall S., Kay
M., Lennard N., McLay K., Mayes R., Pettett A., Rajandream M.A., Lyne M.,
Benes V., Rechmann S., Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert
T.-H., Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S., Gabel
C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A., Neumann S.,
Argiriou A., Vitale D., Liguori R., Piravandi E., Massenet O., Quigley F.,
Clabauld G., Muendlein A., Felber R., Schnabl S., Hiller R., Schmidt W.,
Lecharny A., Aubourg S., Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta
E., Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T., Heijnen
L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C., Frishman D.,
Haase D., Lemcke K., Mewes H.-W., Stocker S., Zaccaria P., Bevan M., Wilson
R.K., de la Bastide M., Habermann K., Parnell L., Dedhia N., Gnoj L., Schutz
K., Huang E., Spiegel L., Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh
J., Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J., Latreille
P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D., Minx P., Bentley
D., Fulton B., Miller N., Greco T., Kemp K., Kramer J., Fulton L., Mardis
E., Dante M., Pepin K., Hillier L., Nelson J., Spieth J., Ryan E., Andrews
S., Geisel C., Layman D., Du H., Ali J., Berghoff A., Jones K., Drone K.,
Cotton M., Joshu C., Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B.,
Yordan C., Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah
R., Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S., Granat
S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A., Chen E., Marra
M., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.";
Nature 402:769-777(1999).
(PubMed=10617198)
Other chromosome IV papers
Bevan M., Bancroft I., Bent E., Love K., Goodman H., Dean C., Bergkamp
R., Dirkse W., van Staveren M., Stiekema W., Drost L., Ridley P., Hudson S.-A.,
Patel K., Murphy G., Piffanelli P., Wedler H., Wedler E., Wambutt R., Weitzenegger
T., Pohl T., Terryn N., Gielen J., Villarroel R., De Clerck R., van Montagu
M., Lecharny A., Auborg S., Gy I., Kreis M., Lao N., Kavanagh T., Hempel
S., Kotter P., Entian K.-D., Rieger M., Schaeffer M., Funk B., Mueller-Auer
S., Silvey M., James R., Montfort A., Pons A., Puigdomenech P., Douka A.,
Voukelatou E., Milioni D., Hatzopoulos P., Piravandi E., Obermaier B., Hilbert
H., Duesterhoeft A., Moores T., Jones J.D.G., Eneva T., Palme K., Benes V.,
Rechman S., Ansorge W., Cooke R., Berger C., Delseny M., Voet M., Volckaert
G., Mewes H.-W., Klosterman S., Schueller C., Chalwatzis N.;
"Analysis of 1.9 Mb of contiguous sequence from chromosome 4 of Arabidopsis
thaliana.";
Nature 391:485-488(1998).
(PubMed=9461215)
Chromosome V complete sequence
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E., Miyajima
N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M., Matsumoto
M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K., Okumura S.,
Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Sato S.,
de la Bastide M., Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston
R., Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J., Stoneking
T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M., Belter E., Cordum
H., Cordes M., Courtney L., Courtney W., Dante M., Du H., Edwards J., Fryman
J., Haakensen B., Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney
E., Ozersky P., Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum
M., Bell M., Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil
D., Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra
M., Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I., Volckaert
G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T., Entian K.-D., Terryn
N., Hartley N., Bent E., Johnson S., Langham S.-A., McCullagh B., Robben
J., Grymonprez B., Zimmermann W., Ramsperger U., Wedler H., Balke K., Wedler
E., Peters S., van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S., Feldpausch
M., Lamberth S., Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K.,
Kolesov G., Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P.,
Mewes H.-W., Bevan M., Fransz P.F.;
"Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
Nature 408:823-826(2000).
(PubMed=11130714)
Other chromosome V papers
Sato S., Kotani H., Nakamura Y., Kaneko T., Asamizu E., Fukami M., Miyajima
N., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence
features of the 1.6 Mb regions covered by twenty physically assigned P1 clones.";
DNA Res. 4:215-230(1997).
(PubMed=9330910)
Kotani H., Nakamura Y., Sato S., Kaneko T., Asamizu E., Miyajima N., Tabata
S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. II.
Sequence features of the regions of 1,044,062 bp covered by thirteen physically
assigned P1 clones.";
DNA Res. 4:291-300(1997).
(PubMed=9405937)
Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N., Tabata
S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence
features of the regions of 1,191,918 bp covered by seventeen physically assigned
P1 clones.";
DNA Res. 4:401-414(1997).
(PubMed=9501997)
Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. IV. Sequence
features of the regions of 1,456,315 bp covered by nineteen physically assigned
P1 and TAC clones.";
DNA Res. 5:41-54(1998).
(PubMed=9628582)
Kaneko T., Kotani H., Nakamura Y., Sato S., Asamizu E., Miyajima N., Tabata
S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. V. Sequence
features of the regions of 1,381,565 bp covered by twenty one physically assigned
P1 and TAC clones.";
DNA Res. 5:131-145(1998).
(PubMed=9679202)
Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N., Tabata
S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VI. Sequence
features of the regions of 1,367,185 bp covered by 19 physically assigned
P1 and TAC clones.";
DNA Res. 5:203-216(1998).
(PubMed=9734815)
Nakamura Y., Sato S., Asamizu E., Kaneko T., Kotani H., Miyajima N., Tabata
S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VII. Sequence
features of the regions of 1,013,767 bp covered by sixteen physically assigned
P1 and TAC clones.";
DNA Res. 5:297-308(1998).
(PubMed=9872454)
Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N., Tabata
S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence
features of the regions of 1,081,958 bp covered by seventeen physically assigned
P1 and TAC clones.";
DNA Res. 5:379-391(1998).
(PubMed=10048488)
Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Kotani H., Miyajima
N., Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. IX. Sequence
features of the regions of 1,011,550 bp covered by seventeen P1 and TAC clones.";
DNA Res. 6:183-195(1999).
(PubMed=10470850)
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H., Tabata
S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
features of the regions of 3,076,755 bp covered by sixty P1 and TAC clones.";
DNA Res. 7:31-63(2000).
(PubMed=10718197)
Mitochondrial DNA
Unseld M., Marienfeld J.R., Brandt P., Brennicke A.;
"The mitochondrial genome of Arabidopsis thaliana contains 57 genes in
366,924 nucleotides.";
Nat. Genet. 15:57-61(1997).
(PubMed=8988169)
Chloroplastic DNA
Sato S, Nakamura Y, Kaneko T, Asamizu E, Tabata S.;
"Complete structure of the chloroplast genome of Arabidopsis thaliana.";
DNA Res. 6:283-90(1999).
(PubMed=10574454)
Last modified 07/Jan/2003 by MIS
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