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This list contains links to some microbe-specific resources. These links as well as many more are also available from the ExPASy Life Science Directory and the UniProtKB/Swiss-Prot Documentation.

[Bacteria][Archaea][UniProtKB/Swiss-Prot documents]

Bacteria
WDCM - World Data Center for Microorganisms List of Bacterial Names with Standing in Nomenclature List of complete bacterial proteomes in Swiss-Prot (HAMAP) CBS - CBS Genome Atlas Database CMR - TIGR Comprehensive Microbial Ressource GIB - Genome information broker for Microbial genomes GeneQuiz GOLD Genomes On-line Database HOBACGEN - Homologous Bacterial Genes db Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen BPGD - Bacterial polysaccharide gene db Bacterial quorum sensing MicrobeWorld - Educational site on microbes E.coli Swiss-Prot list - Links to E.coli WWW sites and to Swiss-Prot entries EcoWeb / EcoGene - Very comprehensive E.coli db ECCE - E.coli Cell Envelope Protein Data Collection ECDC - E.coli db collection EcoCyc - Encyclopedia of E.coli genes and metabolism EchoBASE GenProtEC - E.coli genome and proteome db Colibri - E.coli genome db from Pasteur Institute ECGC - E.coli Genome Center at Wisconsin University DDBJ E.coli - E.coli home page at DDBJ Regulon DB B.subtilis Swiss-Prot list - Links to B.subtilis WWW sites and to Swiss-Prot entries SubtiList - Bacillus subtilis genomic db NRSub - Bacillus subtilis non-redundant db DBTBS - Db of B.subtilis promoters and transcription factors A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project B.anthracis at CNBP - Bacillus anthracis strain Ames WWW site B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project B.bronchiseptica - Bordetella bronchiseptica strain RB50 genome project at Sanger Institute B.parapertussis - Bordetella parapertussis strain 12822 genome project at Sanger Institute B.pertussis - Bordetella pertussis strain Tohama I genome project at Sanger Institute BbDB - TIGR Borrelia burgdorferi genome db B.aphidicola Swiss-Prot list - Links to B.aphidicola Swiss-Prot entries C.jejuni - Campylobacter jejuni strain NCTC 11168 genome project C.muridarum - Chlamydia muridarum strain MoPn genome db at TIGR C.pneumoniae AR39 - Chlamydia pneumoniae strain AR39 genome db at TIGR C.pneumoniae J138 - Japanese Chlamydia pneumoniae strain J138 genome db Chromobacterium violaceum C.michiganensis Claviabacter michiganensis subsp. sepdonicus genome project at Sanger Institute C.difficile - Clostridium difficile strain 630 genome project at Sanger Institute C.diphtheriae - Corynebacterium diphtheriae strain NCTC 13129 genome project at Sanger Institute E.ruminantium - Ehrlichia ruminantium (formerly Cowdria ruminantium) genome project at Sanger Institute DrDB - TIGR Deinococcus radiodurans strain R1 genome db H.influenzae Swiss-Prot list - Links to H.influenzae WWW sites and to Swiss-Prot entries HiDB - Haemophilus influenzae genome db at TIGR H.pylori Swiss-Prot list - Links to H.pylori WWW sites and to Swiss-Prot entries HpDB - Helicobacter pylori strain 26695 genome db at TIGR PyloriGene - Helicobacter pylori genomic db L.lactis - Lactobacillus lactis subsp. lactis strain IL1403 genome db L.plantarum - Lactobacillus plantarum genome project ListiList - Listeria monocytogenes and Listeria innocua genome db M.bovis - Mycobacterium bovis strain AF2122/97 genome project Leproma - Mycobacterium leprae strain TN genome db M.leprae at Sanger - Mycobacterium leprae genome project at Sanger Institute TubercuList - Mycobacterium tuberculosis strain H37Rv genome db MtDB - Mycobacterium tuberculosis strain Oshkosh genome db at TIGR M.tuberculosis at Sanger - Mycobacterium tuberculosis strain H37Rv genome project at Sanger Institute M.tuberculosis structural genomics consortium M.genitalium Swiss-Prot list - Links to M.genitalium Swiss-Prot entries MgDB - Mycoplasma genitalium genome db at TIGR M.pneumoniae Swiss-Prot list - Links to M.pneumoniae Swiss-Prot entries M.pneumoniae - Mycoplasma pneumoniae genome project MypuList - Mycoplasma pulmonis genome db Mycoplasma synoviae genome db N.meningitidis A - Neisseria meningitidis serogroup A strain Z2491 genome project at Sanger Institute N.meningitidis B - Neisseria meningitidis serogroup B strain MC58 genome db at TIGR N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project N.europaea - Nitrosomonas europaea genome project P.marinus - Prochlorococcus marinus genome project P.aeruginosa project - Pseudomonas aeruginosa genome project R.solanacearum - Ralstonia solanacearum genome project Rhizobium pNGR234a Swiss-Prot list - Links to Rhizobium plasmid pNGR234a Swiss-Prot entries Rhizobium pNGR234a analysis RsGDB - Rhodobacter sphaeroides genome db R.palustris - Rhodopseudomonas palustris genome project RicBase - Rickettsia conorii strain Malish 7 genome project R.prowazekii Swiss-Prot list - Links to Rickettsia prowazekii Swiss-Prot entries S.typhi - Salmonella typhi strain CT18 genome project at Sanger Institute S.typhimurium Swiss-Prot list - Links to S.typhimurium Swiss-Prot entries RhizoBase - Sinorhizobium loti genome project S.meliloti - Sinorhizobium meliloti genome project S.aureus - Staphylococcus aureus strain NCTC 8325 genome project S.mutans - Streptococcus mutans strain UAB159 genome project S.pyogenes M1 - Streptococcus pyogenes strain SF370 serotype M1 genome project S.pyogenes M5 - Streptococcus pyogenes strain Manfredo serotype M5 genome project at Sanger Institute S.suis - Streptococcus suis genome project at Sanger Institute S.uberis - Streptococcus uberis genome project at Sanger Institute S.coelicolor - Streptomyces coelicolor strain A3(2) genome project at Sanger Institute S.avermitilis - Streptomyces avermitilis strain MA-4680 genome project PCC 6803 Swiss-Prot list - Links to Synechocystis PCC 6803 Swiss-Prot entries CyanoBase - Synechocystis PCC 6803 db TmDB - Thermotoga maritima genome db at TIGR TpDB - Treponema pallidum genome db at TIGR T.whipplei - Tropheryma whipplei genome project at Sanger Institute U.urealyticum - Ureaplasma urealyticum genome WWW site VcDB - Vibrio cholerae genome db at TIGR X.fastidiosa - Xylella fastidiosa genome WWW site Y.enterocolitica - Yersinia enterocolitica strain 8082 genome project at Sanger Institute Y.pestis at Sanger - Yersinia pestis strain CO-92 Biovar Orientalis genome project at Sanger Institute

Bacteria

WDCM - World Data Center for Microorganisms
List of Bacterial Names with Standing in Nomenclature
List of complete bacterial proteomes in Swiss-Prot (HAMAP)
CBS - CBS Genome Atlas Database
CMR - TIGR Comprehensive Microbial Ressource
GIB - Genome information broker for Microbial genomes
GeneQuiz
GOLD Genomes On-line Database
HOBACGEN - Homologous Bacterial Genes db
Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen
BPGD - Bacterial polysaccharide gene db
Bacterial quorum sensing
MicrobeWorld - Educational site on microbes
E.coli Swiss-Prot list - Links to E.coli WWW sites and to Swiss-Prot entries
EcoWeb / EcoGene - Very comprehensive E.coli db
ECCE - E.coli Cell Envelope Protein Data Collection
ECDC - E.coli db collection
EcoCyc - Encyclopedia of E.coli genes and metabolism
EchoBASE
GenProtEC - E.coli genome and proteome db
Colibri - E.coli genome db from Pasteur Institute
ECGC - E.coli Genome Center at Wisconsin University
DDBJ E.coli - E.coli home page at DDBJ
Regulon DB
B.subtilis Swiss-Prot list - Links to B.subtilis WWW sites and to Swiss-Prot entries
SubtiList - Bacillus subtilis genomic db
NRSub - Bacillus subtilis non-redundant db
DBTBS - Db of B.subtilis promoters and transcription factors
A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project
B.anthracis at CNBP - Bacillus anthracis strain Ames WWW site
B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project
B.bronchiseptica - Bordetella bronchiseptica strain RB50 genome project at Sanger Institute
B.parapertussis - Bordetella parapertussis strain 12822 genome project at Sanger Institute
B.pertussis - Bordetella pertussis strain Tohama I genome project at Sanger Institute
BbDB - TIGR Borrelia burgdorferi genome db
B.aphidicola Swiss-Prot list - Links to B.aphidicola Swiss-Prot entries
C.jejuni - Campylobacter jejuni strain NCTC 11168 genome project
C.muridarum - Chlamydia muridarum strain MoPn genome db at TIGR
C.pneumoniae AR39 - Chlamydia pneumoniae strain AR39 genome db at TIGR
C.pneumoniae J138 - Japanese Chlamydia pneumoniae strain J138 genome db
Chromobacterium violaceum
C.michiganensis Claviabacter michiganensis subsp. sepdonicus genome project at Sanger Institute
C.difficile - Clostridium difficile strain 630 genome project at Sanger Institute
C.diphtheriae - Corynebacterium diphtheriae strain NCTC 13129 genome project at Sanger Institute
E.ruminantium - Ehrlichia ruminantium (formerly Cowdria ruminantium) genome project at Sanger Institute
DrDB - TIGR Deinococcus radiodurans strain R1 genome db
H.influenzae Swiss-Prot list - Links to H.influenzae WWW sites and to Swiss-Prot entries
HiDB - Haemophilus influenzae genome db at TIGR
H.pylori Swiss-Prot list - Links to H.pylori WWW sites and to Swiss-Prot entries
HpDB - Helicobacter pylori strain 26695 genome db at TIGR
PyloriGene - Helicobacter pylori genomic db
L.lactis - Lactobacillus lactis subsp. lactis strain IL1403 genome db
L.plantarum - Lactobacillus plantarum genome project
ListiList - Listeria monocytogenes and Listeria innocua genome db
M.bovis - Mycobacterium bovis strain AF2122/97 genome project
Leproma - Mycobacterium leprae strain TN genome db
M.leprae at Sanger - Mycobacterium leprae genome project at Sanger Institute
TubercuList - Mycobacterium tuberculosis strain H37Rv genome db
MtDB - Mycobacterium tuberculosis strain Oshkosh genome db at TIGR
M.tuberculosis at Sanger - Mycobacterium tuberculosis strain H37Rv genome project at Sanger Institute
M.tuberculosis structural genomics consortium
M.genitalium Swiss-Prot list - Links to M.genitalium Swiss-Prot entries
MgDB - Mycoplasma genitalium genome db at TIGR
M.pneumoniae Swiss-Prot list - Links to M.pneumoniae Swiss-Prot entries
M.pneumoniae - Mycoplasma pneumoniae genome project
MypuList - Mycoplasma pulmonis genome db
Mycoplasma synoviae genome db
N.meningitidis A - Neisseria meningitidis serogroup A strain Z2491 genome project at Sanger Institute
N.meningitidis B - Neisseria meningitidis serogroup B strain MC58 genome db at TIGR
N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project
N.europaea - Nitrosomonas europaea genome project
P.marinus - Prochlorococcus marinus genome project
P.aeruginosa project - Pseudomonas aeruginosa genome project
R.solanacearum - Ralstonia solanacearum genome project
Rhizobium pNGR234a Swiss-Prot list - Links to Rhizobium plasmid pNGR234a Swiss-Prot entries
Rhizobium pNGR234a analysis
RsGDB - Rhodobacter sphaeroides genome db
R.palustris - Rhodopseudomonas palustris genome project
RicBase - Rickettsia conorii strain Malish 7 genome project
R.prowazekii Swiss-Prot list - Links to Rickettsia prowazekii Swiss-Prot entries
S.typhi - Salmonella typhi strain CT18 genome project at Sanger Institute
S.typhimurium Swiss-Prot list - Links to S.typhimurium Swiss-Prot entries
RhizoBase - Sinorhizobium loti genome project
S.meliloti - Sinorhizobium meliloti genome project
S.aureus - Staphylococcus aureus strain NCTC 8325 genome project
S.mutans - Streptococcus mutans strain UAB159 genome project
S.pyogenes M1 - Streptococcus pyogenes strain SF370 serotype M1 genome project
S.pyogenes M5 - Streptococcus pyogenes strain Manfredo serotype M5 genome project at Sanger Institute
S.suis - Streptococcus suis genome project at Sanger Institute
S.uberis - Streptococcus uberis genome project at Sanger Institute
S.coelicolor - Streptomyces coelicolor strain A3(2) genome project at Sanger Institute
S.avermitilis - Streptomyces avermitilis strain MA-4680 genome project
PCC 6803 Swiss-Prot list - Links to Synechocystis PCC 6803 Swiss-Prot entries
CyanoBase - Synechocystis PCC 6803 db
TmDB - Thermotoga maritima genome db at TIGR
TpDB - Treponema pallidum genome db at TIGR
T.whipplei - Tropheryma whipplei genome project at Sanger Institute
U.urealyticum - Ureaplasma urealyticum genome WWW site
VcDB - Vibrio cholerae genome db at TIGR
X.fastidiosa - Xylella fastidiosa genome WWW site
Y.enterocolitica - Yersinia enterocolitica strain 8082 genome project at Sanger Institute
Y.pestis at Sanger - Yersinia pestis strain CO-92 Biovar Orientalis genome project at Sanger Institute

Archaea
List of complete archaeal proteomes in Swiss-Prot (HAMAP) A.pernix - Aeropyrum pernix K1 genome db AfDB - Archaeoglobus fulgidus genome db at TIGR Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project M.jannaschii Swiss-Prot list - Links to M.jannaschii Swiss-Prot entries MjDB - Methanococcus jannaschii genome db at TIGR Pyrococcus abyssi genome and re-annotation db T.volcanium - Thermoplasma volcanium genome project

Archaea

List of complete archaeal proteomes in Swiss-Prot (HAMAP)
A.pernix - Aeropyrum pernix K1 genome db
AfDB - Archaeoglobus fulgidus genome db at TIGR
Halobacterium NRC-1 - Halobacterium strain NRC-1 genome project
M.jannaschii Swiss-Prot list - Links to M.jannaschii Swiss-Prot entries
MjDB - Methanococcus jannaschii genome db at TIGR
Pyrococcus abyssi genome and re-annotation db
T.volcanium - Thermoplasma volcanium genome project

UniProtKB/Swiss-Prot documents
List of bacteria that are known to interact with other organisms Escherichia coli strain K12: entries and cross-references to EcoGene Index of Escherichia coli Gene-protein database (ECO2DBASE) entries referenced in Swiss-Prot Bacillus subtilis strain 168: entries, gene names and cross-references to SubtiList Brucella abortus strain 2308: entries and gene names Brucella abortus: entries and gene names Brucella melitensis: entries and gene names Brucella suis: entries and gene names Buchnera aphidicola (subsp. Schizaphis graminum): entries and gene names Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names Coxiella burnetii: entries and gene names Haemophilus influenzae strain Rd: entries and gene names Helicobacter pylori strain 26695: entries and gene names Methanococcus jannaschii: entries and gene names Mycoplasma genitalium strain G-37: entries and gene names Mycoplasma pneumoniae strain M129: entries and gene names Rhizobium plasmid pNGR234a: entries and gene names Rickettsia bellii strain RML369-C: entries and gene names Rickettsia conorii: entries and gene names Rickettsia felis (Rickettsia azadi): entries and gene names Rickettsia prowazekii strain Madrid E: entries and gene names Rickettsia typhi: entries and gene names Salmonella typhimurium strain LT2: entries, gene names and cross-references to StyGene Synechocystis strain PCC 6803: entries and gene names

UniProtKB/Swiss-Prot documents

List of bacteria that are known to interact with other organisms

Last modified 29-Aug-2008

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