ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot
Search for

HAMAP: Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) complete proteome

General information

Species:  Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks)
Species code: ECOLC
Taxonomy: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia (TaxID: 481805) [NEWT/ NCBI]
Description: Escherichia coli is a Gram-negative straight rod, which either uses peritrichous flagella for mobility or is nonmotile. It is a facultatively anaerobic chemoorganotroph capable of both respiratory and fermentative metabolism. E.coli serves a useful function in the body by suppressing the growth of harmful bacterial species and by synthesising appreciable amounts of vitamins. It is an important component of the biosphere. It colonizes the lower gut of animals and survives when released to the natural environment, allowing widespread dissemination to new hosts. Pathogenic E.coli strains are responsible for infection of the enteric, urinary, pulmonary and nervous systems.
Strain ATCC 8739 is a fecal strain. It is used to test the efficiency of antimicrobial agents. It has an insertion element within ompC, and thus only expresses ompF as the major outer membrane porin.
Properties: Presence of flagella: not known
Interaction: not known
Number of membranes: 2
Number of inteins:0
Statistics: Number of ECOLC entries in the UniProt Knowledgebase: 4173 (738 in UniProtKB/Swiss-Prot + 3435 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    ATCC 8739 / DSM 1576 / Crooks
Genome structure:
Chromosome EMBL accession number CP000946 (circular; 4,746,218 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H., Bruce D., Goodwin L., Pitluck S., Kiss H., Brettin T., Detter J.C., Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Ingram L., Richardson P. ;
"Complete sequence of Escherichia coli C str. ATCC 8739.";
Submitted (FEB-2008) to the EMBL/GenBank/DDBJ databases.
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/escco/escco.info.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=18083
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Ecol_ATCC8739
 EBI Proteome Analysis page



Tools

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us HAMAP Swiss-Prot
 Hosted by ch flag SIB Switzerland Mirror sites: Australia  Brazil  Canada  China  Korea
Search for