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HAMAP: Burkholderia xenovorans (strain LB400) complete proteome

General information

Species:  Burkholderia xenovorans (strain LB400)
Species code: BURXL
Taxonomy: Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia (TaxID: 266265) [NEWT/ NCBI]
Description: Burkholderia xenovorans (strain LB400), formerly known as B. fungorum, has one of the largest prokaryotic genomes (9.7 Mb) and is one of the best aerobic PCB degrader. It was isolated from a PCB-containing landfill near in upper New York State by a research team at General Electric Research. It oxidizes more than 20 PCB congeners including some with 4,5 and 6 chlorine substitutions on the biphenyl rings. Three pathways for degradation or the benzoate intermediates from biphenyl oxidation have been found in this organism. It fixes nitrogen. This strain is known by many names. Originally is was described as Pseudomonas cepacia and later, in succession, Burkholderia cepacia, Burkholderia spp., Burkholderia fungorum.
Properties: Presence of flagella: Yes
Interaction: No
Number of membranes: 2
Number of inteins:0
Statistics: Number of BURXL entries in the UniProt Knowledgebase: 8591 (401 in UniProtKB/Swiss-Prot + 8190 in UniProtKB/TrEMBL)


Genome(s) sequenced

Strain:    LB400
Genome structure:
• Chromosome 1 EMBL accession number CP000270 (circular; 4,895,836 bp) (download entry) (download Genome Reviews).
• Chromosome 2 EMBL accession number CP000271 (circular; 3,363,523 bp) (download entry) (download Genome Reviews).
• Chromosome 3 EMBL accession number CP000272 (circular; 1,471,779 bp) (download entry) (download Genome Reviews).
Reference(s):
[1] PubMed=17030797; [ NCBI , EBI , Israel , Japan ]
Chain P.S.G., Denef V.J., Konstantinidis K.T., Vergez L.M., Agullo L., Reyes V.L., Hauser L., Cordova M., Gomez L., Gonzalez M., Land M., Lao V., Larimer F., LiPuma J.J., Mahenthiralingam E., Malfatti S.A., Marx C.J., Parnell J.J., Ramette A., Richardson P., Seeger M., Smith D., Spilker T., Sul W.J., Tsoi T.V., Ulrich L.E., Zhulin I.B., Tiedje J.M. ;
"Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility.";
Proc. Natl. Acad. Sci. U.S.A. 103:15280-15287(2006).
Web links:
Official genome site(s):
http://genome.jgi-psf.org/finished_microbes/burfu/burfu.home.html
Other web sites:
Entrez Genome Project: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&Cmd=DetailsSearch&Term=txid266265%5Borgn%5D
GIB (DDBJ): http://gib.genes.nig.ac.jp/single/index.php?spid=Bxen_LB400
PEDANT: http://pedant.gsf.de:3345/pedant3htmlview/pedant3view?Method=start_method&Db=p3_p254_Bur_xenov
 EBI Proteome Analysis page



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