PROSITE - Entry: PS01165

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Entry: PS01165

General information about the entry
Entry name	COPPER_AMINE_OXID_2
Accession number	PS01165
Entry type	PATTERN
Date	NOV-1997 (CREATED); JUL-1999 (DATA UPDATE); OCT-2008 (INFO UPDATE).
PROSITE Documentation	PDOC00895
Name and characterization of the entry
Description	Copper amine oxidase copper-binding site signature.
Pattern	T-x-[GS]-x(2)-H-[LIVMF]-x(3)-E-[DE]-x-P.
Numerical results
UniProtKB/Swiss-Prot release number: 56.4, total number of sequence entries in that release: 400771. Total number of hits in UniProtKB/Swiss-Prot: 22 hits in 22 different sequences Number of hits on proteins that are known to belong to the set under consideration: 21 hits in 21 different sequences Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences Number of false hits (on unrelated proteins): 1 hits in 1 different sequences Number of known missed hits: 4 Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2 Precision (true hits / (true hits + false positives)): 95.45 % Recall (true hits / (true hits + false negatives)): 84.00 %
Comments
Taxonomic range: Eukaryotes, Prokaryotes (Bacteria) Maximum known number of repetitions of the pattern in a single protein: 1 `Interesting' site in the pattern: 5,copper VERSION: 1
Cross-references
UniProtKB/Swiss-Prot	True positive hits: ABP1_HUMAN (P19801), ABP1_MOUSE (Q8JZQ5), ABP1_RAT (P36633), AMO1_ARTS1 (Q07121), AMO2_ARTS1 (Q07123), AMOH1_SCHPO (O42890), AMOH2_SCHPO (Q9P7F2), AMO_ARATH (Q8H1H9), AMO_ECOLI (P46883), AMO_KLEAE (P49250), AMO_PICAN (P12807), AOC2_HUMAN (O75106), AOC2_MOUSE (Q812C9), AOC3_BOVIN (Q9TTK6), AOC3_HUMAN (Q16853), AOC3_MOUSE (O70423), AOC3_PONAB (Q5R9I0), AOC3_RAT (O08590), AOCX_BOVIN (Q29437), AOCY_BOVIN (O46406), PAOX_ARTGO (P46881) False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile): AMO1_ASPNG (Q12556), AMOH_ARTGO (Q59118), AMO_LENCU (P49252), AMO_PEA (Q43077) `Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences): ABP1_PIG (Q9TRC7), AMO_KLEOX (P80695) False positive hits (sequences which do not belong to the set under consideration): THII_PSEPK (Q88CY4) Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format] Retrieve the sequence logo from the alignment
PDB [Detailed view]	1A2V; 1AV4; 1AVK; 1AVL; 1D6U; 1D6Y; 1D6Z; 1DYU; 1EKM; 1IQX; 1IQY; 1IU7; 1IVU; 1IVV; 1IVW; 1IVX; 1JRQ; 1LVN; 1OAC; 1PU4; 1QAF; 1QAK; 1QAL; 1RJO; 1SIH; 1SII; 1SPU; 1TU5; 1UI7; 1US1; 1W4N; 1W5Z; 1W6C; 1W6G; 1WMN; 1WMO; 1WMP; 2BT3; 2C10; 2C11; 2CFD; 2CFG; 2CFK; 2CFL; 2CFW; 2CG0; 2CG1; 2CWT; 2CWU; 2CWV; 2D1W; 2E2T; 2E2U; 2E2V; 2OOV; 2OQE; 2PNC; 2YX9; 2ZL8;

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