ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us PROSITE Swiss-Prot
Search for

PROSITE documentation PDOC00397

Bacterial luciferase subunits signature

Description:

Luminous bacteria are abundant and widely distributed Gram-negative motile rods. The enzyme responsible for bioluminescence, bacterial luciferase [1,2,3] (EC 1.14.14.3), catalyzes the oxidation of reduced riboflavin phosphate (FMNH2) and a long chain fatty aldehyde with the emission of blue green light (490 nm). Luciferase is a heterodimeric enzyme composed of an α subunit (gene luxA) and a β subunit (gene luxB). The two subunits appear to have arisen by gene duplication.

The bioluminescence operon of some species of Photobacterium encodes a protein known as the non-fluorescent flavoprotein (NFP) (gene luxF). NFP, whose function is not yet known, contains an unusual non-covalently bound flavin. It is evolutionary related to the luxA/luxB subunits.

As a signature for this family, we selected a conserved region located in the central part of these proteins.

Last update:

June 1994 / Text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

BACTERIAL_LUCIFERASE, PS00494Bacterial luciferase subunits signature  (PATTERN)
Consensus pattern: [GA] - [LIVM] - P - [LIVM] - x - [LIVMFY] - x - W - x(6) - [RK] - x(6) - Y - x(3) - [AR]
Sequences known to belong to this class detected by the pattern: ALL
Other sequence(s) detected in Swiss-Prot: NONE
• Retrieve an alignment of Swiss-Prot true positive hits:
  Clustal format, color, condensed view  / Clustal format, color  / Clustal format, plain text  / Fasta format
Retrieve the sequence logo from the alignment
Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00494
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00494
Scan Swiss-Prot/TrEMBL entries against PS00494
view ligand binding statistics
Matching PDB structures: 1BRL 1BSL 1FVP 1LUC ... [ALL]

References:

1 AuthorsMeighen E.A.
TitleMolecular biology of bacterial bioluminescence.
SourceMicrobiol. Rev. 55:123-142(1991).
PubMed ID2030669
2 AuthorsMeighen E.A.
TitleBacterial bioluminescence: organization, regulation, and application of the lux genes.
SourceFASEB J. 7:1016-1022(1993).
PubMed ID8370470
3 AuthorsO'Kane D.J.O., Prasher D.C.
SourceMol. Microbiol. 6:443-449(1992).

Copyright:

This PROSITE entry is copyright by the Swiss Institute of Bioinformatics (SIB). There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://www.isb-sib.ch/announce/or email to license@isb-sib.ch).

Miscellaneous:

View entry in original PROSITE document format
View entry in raw text format (no links)

ExPASy logo ExPASy Home page Site Map Search ExPASy Contact us PROSITE Swiss-Prot
 Hosted by kr flag YPRC Korea Mirror sites: Australia  Brazil  Canada  China  Switzerland