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PROSITE documentation PDOC00166

Thiamine pyrophosphate enzymes signature

Description:

A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [1] that some of these enzymes are structurally related. These related TPP enzymes are:

As a signature pattern for these enzymes we have selected a conserved region which is located in their C-terminal section.

Note:

Other TPP enzymes such as the E1 component of pyruvate dehydrogenase complex, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase, and transketolase do not seem to be related to the above enzymes.

Last update:

November 1995 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

TPP_ENZYMES, PS00187Thiamine pyrophosphate enzymes signature  (PATTERN)
Consensus pattern: [LIVMF] - [GSA] - x(5) - P - x(4) - [LIVMFYW] - x - [LIVMF] - x - G - D - [GSA] - [GSAC]
Sequences known to belong to this class detected by the pattern: ALL, except for 13 sequences
Other sequence(s) detected in Swiss-Prot: a hypothetical protein in the puf photosynthesis operon of Rhodobacter capsulatus; this protein could be a TPP enzyme.
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Taxonomic tree view of all Swiss-Prot/TrEMBL entries matching PS00187
Retrieve a list of all Swiss-Prot/TrEMBL entries matching PS00187
Scan Swiss-Prot/TrEMBL entries against PS00187
view ligand binding statistics
Matching PDB structures: 1BFD 1JSC 1MCZ 1N0H ... [ALL]

References:

1 AuthorsGreen J.B.A.
TitlePyruvate decarboxylase is like acetolactate synthase (ILV2) and not like the pyruvate dehydrogenase E1 subunit.
SourceFEBS Lett. 246:1-5(1989).
PubMed ID2651151
2 AuthorsKoga J., Adachi T., Hidaka H.
TitleMolecular cloning of the gene for indolepyruvate decarboxylase from Enterobacter cloacae.
SourceMol. Gen. Genet. 226:10-16(1991).
PubMed ID2034209
3 AuthorsTsou A.Y., Ransom S.C., Gerlt J.A., Buechter D.D., Babbitt P.C., Kenyon G.L.
TitleMandelate pathway of Pseudomonas putida: sequence relationships involving mandelate racemase, (S)-mandelate dehydrogenase, and benzoylformate decarboxylase and expression of benzoylformate decarboxylase in Escherichia coli.
SourceBiochemistry 29:9856-9862(1990).
PubMed ID2271624

Copyright:

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