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PROSITE documentation PDOC00081

Cytochrome P450 cysteine heme-iron ligand signature

Description:

Cytochrome P450's [1,2,3,E1] are a group of enzymes involved in the oxidative metabolism of a high number of natural compounds (such as steroids, fatty acids, prostaglandins, leukotrienes, etc) as well as drugs, carcinogens and mutagens. Based on sequence similarities, P450's have been classified into about forty different families [4,5]. P450's are proteins of 400 to 530 amino acids; the only exception is Bacillus BM-3 (CYP102) which is a protein of 1048 residues that contains a N-terminal P450 domain followed by a reductase domain. P450's are heme proteins. A conserved cysteine residue in the C-terminal part of P450's is involved in binding the heme iron in the fifth coordination site. From a region around this residue, we developed a ten residue signature specific to P450's.

Note:

The term 'cytochrome' P450, while commonly used, is incorrect as P450 are not electron-transfer proteins; the appropriate name is P450 'heme- thiolate proteins'.

Expert(s) to contact by email:

Degtyarenko K.N.

Last update:

December 2004 / Pattern and text revised.

Technical section:

PROSITE method (with tools and information) covered by this documentation:

CYTOCHROME_P450, PS00086Cytochrome P450 cysteine heme-iron ligand signature  (PATTERN)
Consensus pattern: [FW] - [SGNH] - x - [GD] - {F} - [RKHPT] - {P} - C - [LIVMFAP] - [GAD]
C is the heme iron ligand
Sequences known to belong to this class detected by the pattern: ALL, except for P450 IIB10 from mouse, which has Lys in the first position of the pattern
Other sequence(s) detected in Swiss-Prot: 9.
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Matching PDB structures: 1AKD 1BU7 1BVY 1C8J ... [ALL]

References:

1 AuthorsNebert D.W., Gonzalez F.J.
TitleP450 genes: structure, evolution, and regulation.
SourceAnnu. Rev. Biochem. 56:945-993(1987).
PubMed ID3304150
DOI10.1146/annurev.bi.56.070187.004501
2 AuthorsCoon M.J., Ding X.X., Pernecky S.J., Vaz A.D.
TitleCytochrome P450: progress and predictions.
SourceFASEB J. 6:669-673(1992).
PubMed ID1537454
3 AuthorsGuengerich F.P.
TitleReactions and significance of cytochrome P-450 enzymes.
SourceJ. Biol. Chem. 266:10019-10022(1991).
PubMed ID2037557
4 AuthorsNelson D.R., Kamataki T., Waxman D.J., Guengerich F.P., Estabrook R.W., Feyereisen R., Gonzalez F.J., Coon M.J., Gunsalus I.C., Gotoh O.
TitleThe P450 superfamily: update on new sequences, gene mapping, accession numbers, early trivial names of enzymes, and nomenclature.
SourceDNA Cell Biol. 12:1-51(1993).
PubMed ID7678494
5 AuthorsDegtyarenko K.N., Archakov A.I.
TitleMolecular evolution of P450 superfamily and P450-containing monooxygenase systems.
SourceFEBS Lett. 332:1-8(1993).
PubMed ID8405421
E1 Sourcehttp://www.icgeb.trieste.it/p450/

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